Detail information of GWHGAAZE016120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267914.10PREDICTED: tubby-like F-box protein 8 [Vitis vinifera]
Swissprottr|Q75HX5|TLP8_ORYSJ0Tubby-like F-box protein 8
trEMBLtr|F6GY33|F6GY33_VITVI0Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIR10AT1G76900.22E-164tubby like protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6967707369681707+
GWHAAZE00000004mRNA6967707369681707+
GWHAAZE00000004exon6967707369677429+
GWHAAZE00000004exon6967828169678368+
GWHAAZE00000004exon6968012669680258+
GWHAAZE00000004exon6968098769681707+
GWHAAZE00000004CDS6967707369677429+
GWHAAZE00000004CDS6967828169678368+
GWHAAZE00000004CDS6968012669680258+
GWHAAZE00000004CDS6968098769681707+
Transcript Sequence

Network for GWHGAAZE016120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box551071.40E-10
PF01167.19Tub1194271.10E-112
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE016120.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3020406080100120140160180Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf34.769
SRR3591706second leaf18.927
SRR3591707mature leaf17.310
SRR3591708Shoot apex20.771
SRR3591709Stem24.519
SRR3591710White floral bud19.157
SRR3591711White flower19.326
SRR3591712Green floral bud55.464
SRR3591713Yellow flower16.722
SRP173429 SRR8316895Juvenile bud stage 21.598
SRR8316896Juvenile bud stage 65.174
SRR8316897Juvenile bud stage 33.898
SRR8316894Third green stage 29.042
SRR8316900Third green stage 90.828
SRR8316901Third green stage 104.540
SRR8316898Complete white stage 13.628
SRR8316899Complete white stage 30.057
SRR8316903Complete white stage 18.363
SRR8316902Silver flowering stage9.959
SRR8316904Silver flowering stage18.373
SRR8316905Silver flowering stage7.307
SRR8316906Gold flowering stage 24.534
SRR8316907Gold flowering stage 24.551
SRR8316908Gold flowering stage 18.961
SRP132670SRR6706286Control54.661
SRR6706287Light intensity 50%46.618
SRR6706288Light intensity 20%44.164
CNP0000432CNS0095592Slightly white alabastrum(diploid) 196.877
CNS0095593Slightly white alabastrum(diploid) 279.102
CNS0095594Slightly white alabastrum(diploid) 3108.199
CNS0095595Whole white alabastrum(diploid) 297.120
CNS0095596Whole white alabastrum(diploid) 3129.019
CNS0095597Whole white alabastrum(diploid) 476.399
CNS0095598Silvery flower (diploied) 132.027
CNS0095599Silvery flower (diploied) 227.596
CNS0095600Silvery flower (diploied) 337.257
CNS0095601Golden flower (diploid) 124.902
CNS0095602Golden flower (diploid) 243.388
CNS0095603Golden flower (diploid) 340.471
CNS0095604Slightly white alabastrum(tetraploid) 1163.208
CNS0095605Slightly white alabastrum(tetraploid) 2164.206
CNS0095606Slightly white alabastrum(tetraploid) 348.408
CNS0095607Whole white alabastrum(tetraploid) 1115.198
CNS0095608Whole white alabastrum(tetraploid) 254.658
CNS0095609Whole white alabastrum(tetraploid) 374.864
CNS0095610Silvery flower (tetraploid) 138.454
CNS0095611Silvery flower (tetraploid) 239.611
CNS0095612Silvery flower (tetraploid) 336.927
CNS0095613Golden flower (tetraploid) 125.651
CNS0095614Golden flower (tetraploid) 241.130
CNS0095615Golden flower (tetraploid) 344.046
CRA001975CRR073297Stem 163.045
CRR073298Stem 272.381
CRR073299Stem 358.073
CRR073300Leaf 179.723
CRR073301Leaf 289.879
CRR073302Leaf 383.182
CRR073303Juvenile bud 128.289
CRR073304Juvenile bud 225.993
CRR073305Juvenile bud 340.822
CRR073306Third green 133.449
CRR073307Third green 223.706
CRR073308Third green 329.073
CRR073309Second white 139.879
CRR073310Second white 230.113
CRR073311Second white 330.090
CRR073312Silver flowering 160.041
CRR073313Silver flowering 273.084
CRR073314Silver flowering 353.515
CRR073315Gold flowering 137.345
CRR073316Gold flowering 249.033
CRR073317Gold flowering 347.467
CRR073318Tawny withering 174.072
CRR073319Tawny withering 251.797
CRR073320Tawny withering 369.923