Gene detail

Detail information of GWHGAAZE016117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP10040.1	0	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UNC0\|A0A068UNC0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_42 {ECO:0000313\|EMBL:CDP10040.1}
TAIR10	AT1G21200.1	6E-95	sequence-specific DNA binding transcription factors

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69608861	69610126	+
GWHAAZE00000004	mRNA	69608861	69610126	+
GWHAAZE00000004	exon	69608861	69610126	+
GWHAAZE00000004	CDS	69608861	69610126	+

Transcript Sequence
>GWHTAAZE016137 ATGGAAGCGAATTTGCCATCAGGAAATATGATTCCGGGTGGCACTTCTTATGGAAGTCTCGATTTACAGAGCCCTCTTCGAGTTCATCATCATCAACAATCCCAACTTACACTCCACCAACACAACCATTCTCACCCAAGCCAAGGGCCAATGGTTCATCCCTTGATCCATGAGAGTTTCCCACTCACGATTGGAACCATGCAAGACTGTGATCCGTCCATTTCTTTGGCAGATTATGCCAAAGGAGAGAGGGGTAAAAATTCCGCTAGTGATGAGGATGAAGATGGTGATGGACACAATGACAGTGGTAGAGGAAAGAAGACTTCTCTGTGGCAAAGAGTGAAATGGACCGATAAGATGGTGAGGATTTTGATTACGGCGGTTTCTTATATAGGGGAGGAGGCTGCTAATGAATATGGCGGTGGGTCGAGAAGGAAATATGCAAATCTGCAGAAAAAGGGCAAGTGGAAATCGGTTTCTAAGGTCATGGCTGAAAGGGGTCATTTCGTTTCTCCTCAACAATGCGAGGATAAGTTCAATGATTTAAACAAAAGGTACAAGCGACTTAACGAGATCCTTGGGAGGGGAACTTCTTGCGAGGTTGTTGAGAATCCCGCACTTTTGGATGTAATGGATATATCCGAGAAATCAAAGGAGGAGGTGAGGAAAATTCTTAGCTCGAAGCATTTGTACTATGAGGAGATGTGTTCTTACCATAATGGGAACCGGTTGCATCTTCCTCCAGACCCCGAATTGCAACATTCTTTGAGGTTGGCTCTTAGAAGTAGAGACGACAGGCACCCGCATGATGATCTTGATGATGATGATCAAGATGCAGAAATGGACGATCACGATGAGTTTGAGGAACTCCAAGCCTTGCATGGGGATCGTAGGGGATTATTAGCAAAGAAGTTAAAACAAGGCCAGGGTCATGAAGATTTTAGTTTTGGTAATTCAAAAGGTTCTCTAGATTGTAACAAAACTTCGAATTTTCAGTCACAAAATGCCCATGCTGATGTGAATCAAGCAAATCTATTAGAGAAGCAGTGGATGAAGCAACGGTCACTTCAGTTAGAGGAACAAAAGCTACAAATTCTGGCAAATATGTTGGAATTGGAGAAAGAGAGGTACAAGTGGGAAAGATTTTGCAGGAAAAGAGACCGGGAGTTGGAAATGATGAGAATGGAGAATGAGAGGATGAAACTTGAGAACGACCATATGGCCATAGAGTTGAAGCGAAAGGAGATGGGGGTTGACAATAACTAA

Network for GWHGAAZE016117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	113	237	1.60E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.271
	SRR3591706	second leaf	12.437
	SRR3591707	mature leaf	27.991
	SRR3591708	Shoot apex	14.819
	SRR3591709	Stem	21.056
	SRR3591710	White floral bud	19.669
	SRR3591711	White flower	28.162
	SRR3591712	Green floral bud	12.549
	SRR3591713	Yellow flower	30.116
SRP173429	SRR8316895	Juvenile bud stage	4.999
	SRR8316896	Juvenile bud stage	7.911
	SRR8316897	Juvenile bud stage	3.265
	SRR8316894	Third green stage	2.648
	SRR8316900	Third green stage	9.299
	SRR8316901	Third green stage	8.474
	SRR8316898	Complete white stage	6.157
	SRR8316899	Complete white stage	16.044
	SRR8316903	Complete white stage	15.719
	SRR8316902	Silver flowering stage	10.850
	SRR8316904	Silver flowering stage	14.948
	SRR8316905	Silver flowering stage	8.601
	SRR8316906	Gold flowering stage	29.728
	SRR8316907	Gold flowering stage	22.740
	SRR8316908	Gold flowering stage	30.116
SRP132670	SRR6706286	Control	9.491
	SRR6706287	Light intensity 50%	12.194
	SRR6706288	Light intensity 20%	11.411
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.265
	CNS0095593	Slightly white alabastrum(diploid) 2	8.397
	CNS0095594	Slightly white alabastrum(diploid) 3	7.232
	CNS0095595	Whole white alabastrum(diploid) 2	6.011
	CNS0095596	Whole white alabastrum(diploid) 3	5.253
	CNS0095597	Whole white alabastrum(diploid) 4	6.372
	CNS0095598	Silvery flower (diploied) 1	14.891
	CNS0095599	Silvery flower (diploied) 2	8.156
	CNS0095600	Silvery flower (diploied) 3	19.318
	CNS0095601	Golden flower (diploid) 1	12.383
	CNS0095602	Golden flower (diploid) 2	22.370
	CNS0095603	Golden flower (diploid) 3	19.717
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.652
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.962
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.777
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.243
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.797
	CNS0095610	Silvery flower (tetraploid) 1	25.169
	CNS0095611	Silvery flower (tetraploid) 2	20.178
	CNS0095612	Silvery flower (tetraploid) 3	26.372
	CNS0095613	Golden flower (tetraploid) 1	26.826
	CNS0095614	Golden flower (tetraploid) 2	29.291
	CNS0095615	Golden flower (tetraploid) 3	36.287
CRA001975	CRR073297	Stem 1	7.428
	CRR073298	Stem 2	8.658
	CRR073299	Stem 3	6.047
	CRR073300	Leaf 1	10.067
	CRR073301	Leaf 2	9.120
	CRR073302	Leaf 3	5.187
	CRR073303	Juvenile bud 1	5.732
	CRR073304	Juvenile bud 2	4.151
	CRR073305	Juvenile bud 3	6.748
	CRR073306	Third green 1	7.762
	CRR073307	Third green 2	5.334
	CRR073308	Third green 3	7.322
	CRR073309	Second white 1	8.856
	CRR073310	Second white 2	10.218
	CRR073311	Second white 3	13.032
	CRR073312	Silver flowering 1	12.604
	CRR073313	Silver flowering 2	9.589
	CRR073314	Silver flowering 3	7.744
	CRR073315	Gold flowering 1	3.401
	CRR073316	Gold flowering 2	6.556
	CRR073317	Gold flowering 3	4.349
	CRR073318	Tawny withering 1	7.493
	CRR073319	Tawny withering 2	6.897
	CRR073320	Tawny withering 3	5.966