Gene detail

Detail information of GWHGAAZE016101

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009763995.1	PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Nicotiana sylvestris]
Swissprot	tr\|O49048\|VPS45_ARATH	Vacuolar protein sorting-associated protein 45 homolog
trEMBL	tr\|A0A061FI98\|A0A061FI98_THECC	Vacuolar protein sorting 45 {ECO:0000313\|EMBL:EOY16628.1}
TAIR10	AT1G77140.1	vacuolar protein sorting 45

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69187535	69198055	+
GWHAAZE00000004	mRNA	69187535	69198055	+
GWHAAZE00000004	exon	69187535	69187624	+
GWHAAZE00000004	exon	69188187	69188273	+
GWHAAZE00000004	exon	69189836	69190037	+
GWHAAZE00000004	exon	69190232	69190311	+
GWHAAZE00000004	exon	69190722	69190949	+
GWHAAZE00000004	exon	69191480	69191605	+
GWHAAZE00000004	exon	69192002	69192082	+
GWHAAZE00000004	exon	69192178	69192319	+
GWHAAZE00000004	exon	69192730	69192908	+
GWHAAZE00000004	exon	69194335	69194490	+
GWHAAZE00000004	exon	69196388	69196495	+
GWHAAZE00000004	exon	69196751	69196872	+
GWHAAZE00000004	exon	69197893	69198055	+
GWHAAZE00000004	CDS	69187535	69187624	+
GWHAAZE00000004	CDS	69188187	69188273	+
GWHAAZE00000004	CDS	69189836	69190037	+
GWHAAZE00000004	CDS	69190232	69190311	+
GWHAAZE00000004	CDS	69190722	69190949	+
GWHAAZE00000004	CDS	69191480	69191605	+
GWHAAZE00000004	CDS	69192002	69192082	+
GWHAAZE00000004	CDS	69192178	69192319	+
GWHAAZE00000004	CDS	69192730	69192908	+
GWHAAZE00000004	CDS	69194335	69194490	+
GWHAAZE00000004	CDS	69196388	69196495	+
GWHAAZE00000004	CDS	69196751	69196872	+
GWHAAZE00000004	CDS	69197893	69198055	+

Transcript Sequence
>GWHTAAZE016121 ATGGTGGTCGTATCCGCCGTACGAGACTACATTAACCGTATGTTACAGGATATTTCTGGCATGAAGGTCCTCATTCTCGATTCGCAAACGAACTTAGAAGAGGTAGAAGTAGACTCAGAAGCTATCAATCTCAAAGGACTTAAACCTATTGATTCAACAATGGCGGGGGAATCTGCTGTTAGCATTGTGAGTGTAGTGTATTCTCAGTCAGAGCTTCTTCAGAAAGAAGTTTTTTTGGTAGAACTGATAGATTCCATTTCCAAGTCAAAAGAACCCATGTCGCATCTCAAAGCTGTTTACTTCCTCCGTCCGACATCGACTAATATTCAGCTTCTGAAGCGCCAGCTGGCTAGTCCTCGATTTGGGGAGTATCACCTTTTTTTCTCCAACTTATTGGAAAATACTCAGCTTCATATTTTAGCTGATTCAGATGAGCGTGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCGGACTTTGTTGCAGTTGACCCTTACCATTTCACATTGAATATGGCATCAAATCACATGTATATGCTGCCAGCAGTTGTAGATCCTTCAGGTTTGCAGCACTTCTGTGATCGAGTTGTTGATGGACTTGCAGCTATCTTTCTGGCATTAAAACGAAGACCTGTCATTAGATATTCACACACGTCTGATATTGCAAAAAGGATAGCACAAGAAGCAATGAAGCTGATGTACCAGCAGGAAAGTGGCCTTTTTGATTTCAGACGTACAGAAATTGCTCCTTTGCTGCTAGTAATTGATAGGAGGGATGACCCCGTTACTCCATTGCTGAATCAGTGGACATATCAGGCAATGGTTCACGAGTTGATAGGTATTCAAGACAACAAGGTAGATTTGAAAAACATTGGCAAGCTTTCGAAGGATCAACAGGAGGTTGTGCTTTCTTCTGAACAAGATGCCTTTTTTAAAGTGAATATGTATGAGAACTTTGGAGATATTGGAATGAGTATCAAACGGATGGTAGATGAATTCCAGCAAGTTTCTAAAAGTAACCAGAACATTCAGACAATAGAGGACATGGCTAAGTTTGTTGACAACTACCCGGAATATAGAAAAATGCATGGCAATGTTTCTAAGCATGTGACACTGGTCACAGAAATGAGCAAGATAGTTGAAGAACGGAAACTTATGTTAGTTTCACAAACAGAACAAGAGTTGGCTTGCAATGGTGGGCAAGGGGCAGCATTTGAGGCTGTAACAAATCTTTTGAACAACGAAAGTGTCTCTGACATTGACCGTCTACGCCTTGTGATGTTATATGCTTTGCGGTATGAGAAGGAGAGCCCTGTTCAGTTGATGCAGCTTTTCAACAAATTGGCTTCTCGGTCTCCCAAGTATAAGCCTGGGCTTGTGCAATTCCTTCTAAAGCAAGCTGGTGCTGATAAGAGAACTGGGGATCTTTATGGGAACCGGGATCTCTTGAATATCGCTCGTAACATGGCCCGTGGGCTCAAGGGGGTTGAGAATGTGTACACCCAACACCAGCCTCTTCTGTACCAAACTATGGAAAGCATTACCAAGGGGCGGCTTAGAGATGTGGATTACCCTTTTGTTGGAAATCACTTTCAGCAGGCTAGGCCACAGGACGTGGTCATTTTCATAGTCGGCGGAACAACATACGAGGAATCACGTTCGGTTGCTCTACAAAATGCTACCAATTCTGGGATTCGTTTCATTCTTGGTGGCTCTGTGCTTCTTAATTCTAAGAGGTCCGTTTTGAATCATCACTATGTTTTCTAG

Network for GWHGAAZE016101

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00995.24	Sec1	59	578	5.70E-118

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12479	VPS45	Endocytosis	map04144
K12479	VPS45	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006904	biological_process	vesicle docking involved in exocytosis
GO:0016192	biological_process	vesicle-mediated transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.685
	SRR3591706	second leaf	14.663
	SRR3591707	mature leaf	11.921
	SRR3591708	Shoot apex	18.652
	SRR3591709	Stem	23.694
	SRR3591710	White floral bud	30.528
	SRR3591711	White flower	32.999
	SRR3591712	Green floral bud	26.273
	SRR3591713	Yellow flower	32.131
SRP173429	SRR8316895	Juvenile bud stage	13.104
	SRR8316896	Juvenile bud stage	16.026
	SRR8316897	Juvenile bud stage	7.221
	SRR8316894	Third green stage	9.684
	SRR8316900	Third green stage	25.411
	SRR8316901	Third green stage	24.793
	SRR8316898	Complete white stage	20.269
	SRR8316899	Complete white stage	34.022
	SRR8316903	Complete white stage	31.279
	SRR8316902	Silver flowering stage	15.271
	SRR8316904	Silver flowering stage	27.615
	SRR8316905	Silver flowering stage	11.898
	SRR8316906	Gold flowering stage	43.571
	SRR8316907	Gold flowering stage	41.297
	SRR8316908	Gold flowering stage	37.976
SRP132670	SRR6706286	Control	17.959
	SRR6706287	Light intensity 50%	19.562
	SRR6706288	Light intensity 20%	20.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.567
	CNS0095593	Slightly white alabastrum(diploid) 2	14.114
	CNS0095594	Slightly white alabastrum(diploid) 3	11.400
	CNS0095595	Whole white alabastrum(diploid) 2	14.739
	CNS0095596	Whole white alabastrum(diploid) 3	13.007
	CNS0095597	Whole white alabastrum(diploid) 4	16.382
	CNS0095598	Silvery flower (diploied) 1	13.350
	CNS0095599	Silvery flower (diploied) 2	14.045
	CNS0095600	Silvery flower (diploied) 3	34.503
	CNS0095601	Golden flower (diploid) 1	13.623
	CNS0095602	Golden flower (diploid) 2	25.675
	CNS0095603	Golden flower (diploid) 3	25.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.723
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.652
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.936
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.701
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.185
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.777
	CNS0095610	Silvery flower (tetraploid) 1	26.466
	CNS0095611	Silvery flower (tetraploid) 2	27.590
	CNS0095612	Silvery flower (tetraploid) 3	28.228
	CNS0095613	Golden flower (tetraploid) 1	20.055
	CNS0095614	Golden flower (tetraploid) 2	29.831
	CNS0095615	Golden flower (tetraploid) 3	31.965
CRA001975	CRR073297	Stem 1	19.682
	CRR073298	Stem 2	18.101
	CRR073299	Stem 3	20.053
	CRR073300	Leaf 1	26.463
	CRR073301	Leaf 2	25.468
	CRR073302	Leaf 3	22.301
	CRR073303	Juvenile bud 1	28.155
	CRR073304	Juvenile bud 2	29.181
	CRR073305	Juvenile bud 3	27.683
	CRR073306	Third green 1	22.539
	CRR073307	Third green 2	21.467
	CRR073308	Third green 3	23.318
	CRR073309	Second white 1	27.656
	CRR073310	Second white 2	33.218
	CRR073311	Second white 3	36.304
	CRR073312	Silver flowering 1	32.316
	CRR073313	Silver flowering 2	31.637
	CRR073314	Silver flowering 3	25.822
	CRR073315	Gold flowering 1	11.410
	CRR073316	Gold flowering 2	15.050
	CRR073317	Gold flowering 3	9.635
	CRR073318	Tawny withering 1	23.881
	CRR073319	Tawny withering 2	18.813
	CRR073320	Tawny withering 3	23.085