Gene detail

Detail information of GWHGAAZE016099

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU17414.1	1.91528E-55	hypothetical protein MIMGU_mgv1a001764mg [Erythranthe guttata]
Swissprot	tr\|Q6YYC0\|C3H55_ORYSJ	3E-26	Zinc finger CCCH domain-containing protein 55
trEMBL	tr\|A0A022PPT2\|A0A022PPT2_ERYGU	7E-56	Uncharacterized protein {ECO:0000313\|EMBL:EYU17414.1}
TAIR10	AT3G18640.1	1E-17	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69154960	69157982	-
GWHAAZE00000004	mRNA	69154960	69157982	-
GWHAAZE00000004	exon	69154960	69154989	-
GWHAAZE00000004	exon	69155675	69155956	-
GWHAAZE00000004	exon	69156012	69157982	-
GWHAAZE00000004	CDS	69156012	69157982	-
GWHAAZE00000004	CDS	69155675	69155956	-
GWHAAZE00000004	CDS	69154960	69154989	-

Transcript Sequence
>GWHTAAZE016119 ATGATTTTATTTCATGTTCATTTGTGTCATTGTCTTGGCTTCTGGTTTCATGTTGTGTACAGGGGCAAATGCATGAGCAGAGACCGGAGCCGGAGCAGGAGCAGGGGAAGACCAAGAGATCGGAGTCGGAGCCCATCTAATGTGCATAAACGCGTTTCTTATGGAATGATCAATAGAAGAAGTGGGACTGGGATGTCATCTCAACCATGCAAATATTTTTCAGCAGGTATGTGTAAAAAAGGCAGTCAATGTAACTTCTTTCATCCCGATAATCTCAGTTCCCGTGATGAAAAATACTTAGAGGATGACCTGGCAGATAGGAGGAGAGGTAGACTAGCATATGGAGATCTAGAATTTGGTGATGATGAAGAACTGGCAGATAATCCACACCATGGTGGTTCTGGTGATAATTACGAAATAGGCAATAGAAATGTATCTGCTAAATTTGATCACAGGCGGCAACCAATCAGAAGTGGAAAGCACCCTTGCAAGGATTTTATGATGGGGAGATGCCATCGGGATAATTGTAGGTACTTTCACGATGATCCGTCGGCTGCTGATAAATGGGGTGATGATAGGCGGGCCCGAAATTATGATGAGAAGACCAAATCATGGAATGCCGTGGCTTGGGAGGATGTAGAAAAGAATTCAGATACTGCGAAATCCAGTGGTTGGGGTGAAAAACTTCATGATCCAATGGTTGGTGAAAAACGGGGTGATGATAGGCGGGGCCGTAATTTGGTGGAGAGGACCAAATCATGGAACGGATCAACGTGGAATGACGTCAAAGATACCTCAAATACCGCAAAATCCACTGGTTGGGGTGAAGGCTCTGCTATGAATCCAAAATTTCAAAATCCAACAGCTGCTGGAAACCAGGGTGCTGATAGGTGGCATCTGAATTCTGATGAGAAGGCCAAATTATGGAATGGTCCAACATGGAATGATGCAAAAGATACCTCGAATGCTGCAAAATCTACTGGTTGGGGTGAAGGTTCTGTTGGGAACACGAAAATTAATGATCCAATGGTTGCTGAAACACAGGATGATGATAGGCGGGGTTGTAATTTGGATGAAAGGACCATATCGTGGAATAGACCAACACGGAATGACATAAAAGAAACCTCGGATGCATCAAAATCCATTGGGTGGGGTGAGGGTTCCATTGGGGACTTGAAATTACATGATCCAACTGAAAAAAGTACTGATGATAGGCAGGGCCGGAATTTTGATGAGAAGACCAAATCATTGAATGGCCGAACTTTGGATGATGTAAAAGGTACCCCAGATGCTGTAAAATCCACTGGGTCGGGTGAAAAATGTACTGATGATATGCTGGGCCGGAATTTTGATGAGAAGACCAAATCATGGAATGCCCCATTGGATGATGTAAAAGTTAGCTTGGATACTGCAAAATCCAGCAGGTGGTGTGATGGATCTGTTGGGATCTCGACTTTTAACAATTCAACGACTGCTGAAGAGCGTGGCCCTCATCCGGAGAATGAGAGCCAAATGTGGGCCATTCTGAAAGATAAGGCTGCCGAAAGAGATGAGTATGGACATGTTTCACTTCATAGAGATCCCCAAATCATTCCTGAAAGCTCGCAATCTCAAATACATGAAATCTCTATGCACGTTGATGAACAAAAGTTAACGCAAGAAACAGTCACAATGACACAGGTATCTGAAAATTCTCAAAATTCTCATAATATTGCGATAACAGAGGATTTTAATGCTCTCAACAAGGTAAAGGTATCTGATCAAAATGGCGAAACTACCTCTCAACTGCTTCCAACTTCAACTATAAATGATCATAGTCACCAAGGAGCCAATTTAACCACCTCAAATGGAAATAATATTGACTTGAATGTTCCCTTTCAAAATATGAACCCAGAAAACGAGGCAGCAATCCTTCTGAAAGAATCTGTTAAACCATCAACAGAGATTTTGGATATTGGGGCCCCACCTGAGAGAGAAAATATTATTCATGGAAAGGTTGAAGAGACCAATAATATAAGCAAGGAAGAAAAGGCGATGAGGCTGTTTAGAATTGCACTTGTGGAACTTGTTAAGGAGATTTTGAAGCCCAAATGGAAGGAAGGTCAGATGAGTAGAGAAGTTCACAAAACTATTGTGAAGAAAACGGTCGATAAAGTTACCAGTGCCATTCCTGGAGATCAAATCCCGAATACCCAGGAGAAAGTTGACCAATATCTGTCGTTTTCTAAGGGCAAAATCACCAAACTTGTACAGGCATACGTGGAGAGATTTCAGAAGACTTAG

Network for GWHGAAZE016099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14608.7	zf-CCCH_2	69	89	0.00062
PF14608.7	zf-CCCH_2	162	180	0.2

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.819
	SRR3591706	second leaf	11.107
	SRR3591707	mature leaf	11.985
	SRR3591708	Shoot apex	19.792
	SRR3591709	Stem	19.213
	SRR3591710	White floral bud	17.512
	SRR3591711	White flower	17.048
	SRR3591712	Green floral bud	17.313
	SRR3591713	Yellow flower	9.558
SRP173429	SRR8316895	Juvenile bud stage	12.769
	SRR8316896	Juvenile bud stage	15.092
	SRR8316897	Juvenile bud stage	8.457
	SRR8316894	Third green stage	7.264
	SRR8316900	Third green stage	14.562
	SRR8316901	Third green stage	17.852
	SRR8316898	Complete white stage	4.324
	SRR8316899	Complete white stage	22.410
	SRR8316903	Complete white stage	12.167
	SRR8316902	Silver flowering stage	4.268
	SRR8316904	Silver flowering stage	8.430
	SRR8316905	Silver flowering stage	3.236
	SRR8316906	Gold flowering stage	10.709
	SRR8316907	Gold flowering stage	11.672
	SRR8316908	Gold flowering stage	13.810
SRP132670	SRR6706286	Control	14.536
	SRR6706287	Light intensity 50%	14.992
	SRR6706288	Light intensity 20%	15.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.153
	CNS0095593	Slightly white alabastrum(diploid) 2	15.699
	CNS0095594	Slightly white alabastrum(diploid) 3	14.254
	CNS0095595	Whole white alabastrum(diploid) 2	13.133
	CNS0095596	Whole white alabastrum(diploid) 3	8.673
	CNS0095597	Whole white alabastrum(diploid) 4	11.412
	CNS0095598	Silvery flower (diploied) 1	18.710
	CNS0095599	Silvery flower (diploied) 2	13.589
	CNS0095600	Silvery flower (diploied) 3	14.330
	CNS0095601	Golden flower (diploid) 1	14.045
	CNS0095602	Golden flower (diploid) 2	15.585
	CNS0095603	Golden flower (diploid) 3	15.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.460
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.659
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.267
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.949
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.982
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.401
	CNS0095610	Silvery flower (tetraploid) 1	19.312
	CNS0095611	Silvery flower (tetraploid) 2	16.674
	CNS0095612	Silvery flower (tetraploid) 3	11.840
	CNS0095613	Golden flower (tetraploid) 1	13.206
	CNS0095614	Golden flower (tetraploid) 2	16.219
	CNS0095615	Golden flower (tetraploid) 3	8.769
CRA001975	CRR073297	Stem 1	19.389
	CRR073298	Stem 2	17.833
	CRR073299	Stem 3	9.123
	CRR073300	Leaf 1	22.105
	CRR073301	Leaf 2	21.299
	CRR073302	Leaf 3	6.167
	CRR073303	Juvenile bud 1	8.442
	CRR073304	Juvenile bud 2	7.048
	CRR073305	Juvenile bud 3	9.760
	CRR073306	Third green 1	1.380
	CRR073307	Third green 2	2.169
	CRR073308	Third green 3	2.563
	CRR073309	Second white 1	0.766
	CRR073310	Second white 2	1.975
	CRR073311	Second white 3	1.879
	CRR073312	Silver flowering 1	1.273
	CRR073313	Silver flowering 2	1.762
	CRR073314	Silver flowering 3	2.035
	CRR073315	Gold flowering 1	4.134
	CRR073316	Gold flowering 2	8.564
	CRR073317	Gold flowering 3	5.083
	CRR073318	Tawny withering 1	9.752
	CRR073319	Tawny withering 2	9.046
	CRR073320	Tawny withering 3	6.557