Detail information of GWHGAAZE016076


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009774944.13.52562E-73PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Nicotiana sylvestris]
Swissprottr|Q94AQ9|SGRL_ARATH5E-49Protein STAY-GREEN LIKE, chloroplastic (Precursor)
trEMBLtr|K4BT16|K4BT16_SOLLC7E-71Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc04g063240.2.1}
TAIR10AT1G44000.11E-40Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6864281868646215-
GWHAAZE00000004mRNA6864281868646215-
GWHAAZE00000004exon6864281868642879-
GWHAAZE00000004exon6864406068644318-
GWHAAZE00000004exon6864499768645197-
GWHAAZE00000004exon6864603668646215-
GWHAAZE00000004CDS6864603668646215-
GWHAAZE00000004CDS6864499768645197-
GWHAAZE00000004CDS6864406068644318-
GWHAAZE00000004CDS6864281868642879-
Transcript Sequence

Network for GWHGAAZE016076

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12638.8Staygreen781812.30E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K22013SGR, SGRL Biosynthesis of secondary metabolites map01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf80.351
SRR3591706second leaf161.093
SRR3591707mature leaf58.649
SRR3591708Shoot apex133.185
SRR3591709Stem18.473
SRR3591710White floral bud10.326
SRR3591711White flower10.634
SRR3591712Green floral bud11.526
SRR3591713Yellow flower38.452
SRP173429 SRR8316895Juvenile bud stage 29.090
SRR8316896Juvenile bud stage 29.925
SRR8316897Juvenile bud stage 20.141
SRR8316894Third green stage 17.421
SRR8316900Third green stage 30.714
SRR8316901Third green stage 32.036
SRR8316898Complete white stage 7.947
SRR8316899Complete white stage 21.676
SRR8316903Complete white stage 13.736
SRR8316902Silver flowering stage6.140
SRR8316904Silver flowering stage8.336
SRR8316905Silver flowering stage5.451
SRR8316906Gold flowering stage 11.189
SRR8316907Gold flowering stage 6.035
SRR8316908Gold flowering stage 8.967
SRP132670SRR6706286Control46.983
SRR6706287Light intensity 50%40.513
SRR6706288Light intensity 20%41.607
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.954
CNS0095593Slightly white alabastrum(diploid) 217.381
CNS0095594Slightly white alabastrum(diploid) 314.689
CNS0095595Whole white alabastrum(diploid) 210.766
CNS0095596Whole white alabastrum(diploid) 314.956
CNS0095597Whole white alabastrum(diploid) 410.368
CNS0095598Silvery flower (diploied) 127.752
CNS0095599Silvery flower (diploied) 230.078
CNS0095600Silvery flower (diploied) 323.111
CNS0095601Golden flower (diploid) 136.239
CNS0095602Golden flower (diploid) 245.913
CNS0095603Golden flower (diploid) 343.589
CNS0095604Slightly white alabastrum(tetraploid) 119.586
CNS0095605Slightly white alabastrum(tetraploid) 218.513
CNS0095606Slightly white alabastrum(tetraploid) 329.561
CNS0095607Whole white alabastrum(tetraploid) 19.750
CNS0095608Whole white alabastrum(tetraploid) 29.898
CNS0095609Whole white alabastrum(tetraploid) 315.644
CNS0095610Silvery flower (tetraploid) 134.456
CNS0095611Silvery flower (tetraploid) 244.462
CNS0095612Silvery flower (tetraploid) 32.497
CNS0095613Golden flower (tetraploid) 121.328
CNS0095614Golden flower (tetraploid) 238.150
CNS0095615Golden flower (tetraploid) 344.847
CRA001975CRR073297Stem 127.735
CRR073298Stem 222.900
CRR073299Stem 324.406
CRR073300Leaf 112.380
CRR073301Leaf 214.443
CRR073302Leaf 36.928
CRR073303Juvenile bud 16.712
CRR073304Juvenile bud 23.755
CRR073305Juvenile bud 311.907
CRR073306Third green 15.054
CRR073307Third green 22.985
CRR073308Third green 32.795
CRR073309Second white 10.656
CRR073310Second white 21.331
CRR073311Second white 30.603
CRR073312Silver flowering 11.247
CRR073313Silver flowering 22.231
CRR073314Silver flowering 31.514
CRR073315Gold flowering 132.172
CRR073316Gold flowering 232.930
CRR073317Gold flowering 328.682
CRR073318Tawny withering 14.126
CRR073319Tawny withering 24.800
CRR073320Tawny withering 33.055