Gene detail

Detail information of GWHGAAZE016073

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008237793.1	0	PREDICTED: protein kinase APK1A, chloroplastic-like [Prunus mume]
Swissprot	tr\|Q9ZUE0\|PEK12_ARATH	4E-54	Proline-rich receptor-like protein kinase PERK12
trEMBL	tr\|V4T7V7\|V4T7V7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR47570.1}
TAIR10	AT3G13690.1	2E-65	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	68563642	68572079	-
GWHAAZE00000004	mRNA	68563642	68572079	-
GWHAAZE00000004	exon	68563642	68563791	-
GWHAAZE00000004	exon	68566069	68566216	-
GWHAAZE00000004	exon	68566340	68566413	-
GWHAAZE00000004	exon	68566773	68566933	-
GWHAAZE00000004	exon	68567633	68567923	-
GWHAAZE00000004	exon	68568958	68569310	-
GWHAAZE00000004	exon	68570148	68570245	-
GWHAAZE00000004	exon	68570721	68570857	-
GWHAAZE00000004	exon	68571899	68572079	-
GWHAAZE00000004	CDS	68571899	68572079	-
GWHAAZE00000004	CDS	68570721	68570857	-
GWHAAZE00000004	CDS	68570148	68570245	-
GWHAAZE00000004	CDS	68568958	68569310	-
GWHAAZE00000004	CDS	68567633	68567923	-
GWHAAZE00000004	CDS	68566773	68566933	-
GWHAAZE00000004	CDS	68566340	68566413	-
GWHAAZE00000004	CDS	68566069	68566216	-
GWHAAZE00000004	CDS	68563642	68563791	-

Transcript Sequence
>GWHTAAZE016093 ATGTCGATGGAAAGCAATCCTTATATAGCTCCTCGTGTCGTTGTGGCGTTTGATGCCACTAAGGATAGGAGTGAACATGAGTTTAGGCATACTGTTAATGGTATTAGATTGAGGGGTGATATTATTCAAGGCGGCAATACGCTTATGGTCGTTGGTGTCTTGCATAGAGTTCTACATCCCATGGGTTATCACATGCAAGCATCCCCCGAGTCGTTTACTGGGAAAACCATCAGAGTAGTAGAAGAGGAAGTTTCAAAAAAAGTTGATACGTATGTAAAAATGCTCATGCAAAGTGCTGAAGATTGCCAAGATGAAGGGGTTGACATTGAAGTAAAGATTACTGCCGGAACTCCGATCAGGAAGGTTGTTTTACAAGAGGTTCTGACTTCAAATGCAACTTGGCTTGTACTTGATAGGCATTTACGACGGGACTTGAGGTTTTACCTTAAACAGATACCTTGCAAGGTTGCACTAATCCTGGATAACTTCTCTGTTGACGTTGTGAGACCCTATACTAGTGCTGACACGGATAATGTAGAACATAAGTTGGTTTTGTCTATGTTCAAGTCTGTTCCTCTGTCGGCTGGCCAGGATAATGAGAATATCCAGCAGTCTGTTATCTCGTTGTCAGGCTGCCCTGTATCCTTCAGTTCTGTGGAAAACTCTGATGTGTTCAAGAGCAACTCCTCTTCATCCACGTACAAGTCACGGGATCATAGTTTTTCATCGCATGATGATCATAGCTCTACTCCTAAGCAAGAGAAATCAGGTCGACACACCAAAGGTGAATATAAGTTTCATAGTTCTTCCATTTCTACCAACCAGAAACATCGACAAAGTTTTGGGCCTTCCTCTGATGCACCGATACTCTGCGTTGCTTGTGGGCTGAAGACCGAGTTGTACATAAAGGAATCCATGAGATTCAGTTACTCAGAGATACAACTTGCAACAGGTGATTTTTCGAAGGACGCCTTGTTAGGTGAAGGAGGATATGGTTTTGTATATAAAGGCGAGCTCAAGGACGGGCAGATCATTGCAGCAAAAGTACGGAAAGAAGCAAATAAAACAGCAAGTGTTCTTGAGTGGCACCGACGACATGCTATTGCCATTGGAACTGCAAAAGGGTTGCGCTTTTTACATGAAGAGTGCCGTGGTAGTCCCATAATTCACCGGGACCTGCGACCAAGCAATATTCTGCTCACACATGACTTTGTTCCCATGCTAGGTGACTTTGGTCTTGCAAGGTGGAAGAAAAGTGATAGTCCAGTTCAAACTCGAATACTCGGCACATTTGGATATCTTGCACCAGAATACGCAGAGAACGGTATCATCTCCGTGAGAACAGATGTTTTTGCATTTGGCATTGTTCTGATACAACTGATATCTGGACGAAAGGCACTTGATTCAACTAGAGAAGAAGACCAACAGTCCCTTCGACAATGGGCAGCACCACTAATTGAGAGGCTGGCATTGCACGAACTCATTGATCCTCGTCTTGAAGATTCTTATGATACATATGAATTGTACCACATGGCCAGAACAGCTTACTTGTGTATAAAAAGTGAACCCGAAAAGCGCCCTTCAATGGGAGAG

Network for GWHGAAZE016073

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	360	529	6.00E-23

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.152
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.185
	SRR3591708	Shoot apex	0.430
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.032
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.099
SRP173429	SRR8316895	Juvenile bud stage	0.149
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.127
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.129
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.129
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.145
	SRR8316904	Silver flowering stage	0.070
	SRR8316905	Silver flowering stage	0.113
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.084
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.017
	SRR6706287	Light intensity 50%	0.061
	SRR6706288	Light intensity 20%	0.001
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.085
	CNS0095593	Slightly white alabastrum(diploid) 2	0.138
	CNS0095594	Slightly white alabastrum(diploid) 3	0.232
	CNS0095595	Whole white alabastrum(diploid) 2	0.111
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.003
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.007
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.112
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.067
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.002
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.033
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.046