Gene detail

Detail information of GWHGAAZE016067

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32817.1	0	hypothetical protein JCGZ_12109 [Jatropha curcas]
Swissprot	tr\|O04086\|Y1105_ARATH	3E-90	Probable receptor-like protein kinase At1g11050 (Precursor)
trEMBL	tr\|A0A067K9P0\|A0A067K9P0_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP32817.1}
TAIR10	AT1G11050.1	1E-78	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	68405547	68407403	-
GWHAAZE00000004	mRNA	68405547	68407403	-
GWHAAZE00000004	exon	68406299	68407403	-
GWHAAZE00000004	exon	68405547	68405848	-
GWHAAZE00000004	CDS	68406299	68407403	-
GWHAAZE00000004	CDS	68405547	68405848	-

Transcript Sequence
>GWHTAAZE016087 ATGGGCAAGTCCCCATTATACTTTTCTTTCCTCTCTCTCCTTCATCTCATTTTCTTCATTCTCCCCTCAACAAACTCTTCATCATGCCCCATGGATTTCTCTTACATCAAAACCTTCCCATGGGACACTTCACAATGCCATCAACCCACCCAACAATACTGTTGTCAAACCCTTAGAAGCCTCTTTGGTATGGGCCTTGCCCAACGCCTCAAAGACACATCAAATTTTTATCTCCCCAATACTTCCTCTTCAATCTCTTGCTTGTCGAATTTTCGGTCCAAACTCGCCTCCTCAGTTTCGATTCCAGATGGGTTTTTCTCTACTTGTCTGAACGACACGACTGAGTTCACCGTGAACCGTTCGAGCTGTGCTGGCATCGCAACCATAAGAGACTGGGTTAATAGAGTTGGCCCCGTGACCGAGTTGGACTCAGCTTGTAATGCGGACCTAACGGGGTTGACTCGGTGCGGCTTGTGCCTTGATGCTAGCTTGAGGATCACTTCTCAGTTGGTGGCTTTGGATCCTAATGCCACCAAGTGTTTTTACTACACTATTCTATATGTTGTTGGCGTTGTAAATGGATTTGGCCCTCAAGATGTTAGAAGTGCTGCTTGTGCACTAGCCTTGCCCTTGGTTAGGTCATCATCCAATCACGGTTCAAATAATATGAGCCGCAAAAATGTGCTAAAATTGGTTTTTGGGTTCTTGGGAGCTCTTGTGGGAGTAATTCTTGTCTCTGGTTTATTTTTCCTCTACCGGAAGTGGGATAAGAAGAAGAAGCAAAACGCGTACCATGAAGACTATGTGCAGGGTGTTAAAGCACGAGTTTTGCCCAATACAGGCGCAAAATGGTTCAACATAGATGAGCTTGAGCAAGCCACTGACAGTTTCTCTCAAAGGAATTTGATAGGACAAGGCGGTTTCAGTGTTGTTTATAAAGGTACGCTTTCAGATGGCACAGTAGTTGCTGTGAAACAACTGATGAATGATTTGGATGTGACAAGGGACGAAGAATTCAGAAATGAAACAGAGATCATAAGCAAAATAAGGCATAGGAATCTTCTCTCTCTTCGAGGGTGTTGCGCTTCGAGTGATATTGTCAAAGACTGGGCTTGGCAACACGTGAAATCGGGCGATGTTAGAGGTATTTTTGACGAGTGTATAAGGGAGGAAGGGCCAAGAGGGGTGATGGAGAGGTTTGTGCTCGTGGGAATACTTTGTGCACATGTGATGGTGGCACTTAGGCCTACAATTGCTGATGCACTTAAGATGTTGGAAGGTGATATTGATATTCCAAGATTGCCAGATAGGCCATTGCCTCTAAGCCATGAGTCTTTTAGGTCTTCTTTGCAGTTTAGTTTTGTCACTAATGAGGGATCTTCAAGGCCAAGGTCTAGTCTAGTTTAA

Network for GWHGAAZE016067

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF19160.1	SPARK	24	180	1.70E-31
PF07714.18	PK_Tyr_Ser-Thr	300	365	3.50E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RKF3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.951
	SRR3591706	second leaf	0.368
	SRR3591707	mature leaf	0.312
	SRR3591708	Shoot apex	3.120
	SRR3591709	Stem	8.836
	SRR3591710	White floral bud	1.034
	SRR3591711	White flower	2.745
	SRR3591712	Green floral bud	1.696
	SRR3591713	Yellow flower	3.608
SRP173429	SRR8316895	Juvenile bud stage	0.385
	SRR8316896	Juvenile bud stage	0.652
	SRR8316897	Juvenile bud stage	0.366
	SRR8316894	Third green stage	0.096
	SRR8316900	Third green stage	0.161
	SRR8316901	Third green stage	0.212
	SRR8316898	Complete white stage	0.246
	SRR8316899	Complete white stage	0.545
	SRR8316903	Complete white stage	0.394
	SRR8316902	Silver flowering stage	0.444
	SRR8316904	Silver flowering stage	0.210
	SRR8316905	Silver flowering stage	0.439
	SRR8316906	Gold flowering stage	1.557
	SRR8316907	Gold flowering stage	1.095
	SRR8316908	Gold flowering stage	2.187
SRP132670	SRR6706286	Control	0.474
	SRR6706287	Light intensity 50%	0.295
	SRR6706288	Light intensity 20%	0.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.028
	CNS0095593	Slightly white alabastrum(diploid) 2	1.379
	CNS0095594	Slightly white alabastrum(diploid) 3	1.054
	CNS0095595	Whole white alabastrum(diploid) 2	1.415
	CNS0095596	Whole white alabastrum(diploid) 3	0.281
	CNS0095597	Whole white alabastrum(diploid) 4	0.463
	CNS0095598	Silvery flower (diploied) 1	0.881
	CNS0095599	Silvery flower (diploied) 2	2.062
	CNS0095600	Silvery flower (diploied) 3	0.275
	CNS0095601	Golden flower (diploid) 1	0.835
	CNS0095602	Golden flower (diploid) 2	1.391
	CNS0095603	Golden flower (diploid) 3	1.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.491
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.188
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.283
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.819
	CNS0095610	Silvery flower (tetraploid) 1	0.757
	CNS0095611	Silvery flower (tetraploid) 2	0.333
	CNS0095612	Silvery flower (tetraploid) 3	1.342
	CNS0095613	Golden flower (tetraploid) 1	1.212
	CNS0095614	Golden flower (tetraploid) 2	1.705
	CNS0095615	Golden flower (tetraploid) 3	0.490
CRA001975	CRR073297	Stem 1	2.667
	CRR073298	Stem 2	0.981
	CRR073299	Stem 3	2.484
	CRR073300	Leaf 1	0.737
	CRR073301	Leaf 2	0.649
	CRR073302	Leaf 3	0.462
	CRR073303	Juvenile bud 1	0.584
	CRR073304	Juvenile bud 2	0.595
	CRR073305	Juvenile bud 3	0.654
	CRR073306	Third green 1	0.088
	CRR073307	Third green 2	0.213
	CRR073308	Third green 3	0.101
	CRR073309	Second white 1	0.117
	CRR073310	Second white 2	0.576
	CRR073311	Second white 3	0.269
	CRR073312	Silver flowering 1	4.925
	CRR073313	Silver flowering 2	3.390
	CRR073314	Silver flowering 3	5.098
	CRR073315	Gold flowering 1	0.885
	CRR073316	Gold flowering 2	1.955
	CRR073317	Gold flowering 3	3.056
	CRR073318	Tawny withering 1	12.513
	CRR073319	Tawny withering 2	34.029
	CRR073320	Tawny withering 3	10.517