Gene detail

Detail information of GWHGAAZE016065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004142637.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5-like [Cucumis sativus]
Swissprot	tr\|Q0WPW4\|ACCO5_ARATH	7E-160	1-aminocyclopropane-1-carboxylate oxidase 5
trEMBL	tr\|A0A0A0L1U8\|A0A0A0L1U8_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN54542.1}
TAIR10	AT1G77330.1	1E-126	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	68285658	68287492	-
GWHAAZE00000004	mRNA	68285658	68287492	-
GWHAAZE00000004	exon	68285658	68286255	-
GWHAAZE00000004	exon	68286732	68286958	-
GWHAAZE00000004	exon	68287391	68287492	-
GWHAAZE00000004	CDS	68287391	68287492	-
GWHAAZE00000004	CDS	68286732	68286958	-
GWHAAZE00000004	CDS	68285658	68286255	-

Transcript Sequence
>GWHTAAZE016085 ATGGCAATTCCAGTGATCGATTTCTCGAAGCTCAACGGGGAGGAAAGAGCCAAGACAATGGCTCAACTCGCTAATGGGTGCGAAGAATGGGGATTCTTTCAGTTGGTGAATCATGGGATTTCAGAAGAACTCCTCGAGAGGGTTAGAAAGGTGTGTGCGGATTGTTATAAAACGGAAAGAGAAGGAAACTTCAAGAACTCGAAGCCGTTTAAGGCATTGGAAGAGTTGGTTCAAAACAAAGGCGAAGGCAAGGTGGAGAATGTAGATTGGGAGGATGTCTTTCTCCTCTCTGATTCGAACGAATGGCCATCAAATACGCTTGGATTCAAGGAAACTATGGCAGAATATCGAGTCGAACTAAAGAAATTGGCAGAGAAAGTGATGGAAGTGATGGATGAAAACTTGGGCTTAACGAAAGGACACATAAAAAGGGCCTTCAACGGCGGAGAAGGTGACAATGCCTTTTTCGGCACAAAGGTGAGCCATTACCCACCCTGCCCTCACCCAGAGAAGGTGAACGGTCTCCGGGCCCACACAGATGCGGGAGGGGTCATATTACTATTCCAAGATGACAAGGTGAAAGGGCTTCAAATCCTCAAAGATGGGGAGTGGATAGACGTACAACCATTGCCAAACGCCATTGTAATAAACACCGGCGATCAGATCGAGGTGTTGAGTAATGGGAGGTATAAGAGTGTTTGGCACCGTGTTTTGGCTATGTGTGATGGGAATAGGAGGTCAGTTGCTTCGTTCTACAATCCGTCCCTAAACGCTACCATAGCTCCGGCGGTGGAGCTTGTGGAGAAGGTTAACAAAGAGGTGGAACAAGGCTATCCCGAGTTTGTGTTTGGTGATTATATGTCTGTTTATGCTGAACAGAAGTTTCTTCCTAAAGAACCACGGTTCCAAGCTTTGAGGGCAATGTAA

Network for GWHGAAZE016065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	3	99	5.40E-17
PF03171.21	2OG-FeII_Oxy	161	254	4.70E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.119
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.098
	SRR3591709	Stem	0.089
	SRR3591710	White floral bud	0.226
	SRR3591711	White flower	0.652
	SRR3591712	Green floral bud	0.055
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.266
	SRR8316896	Juvenile bud stage	0.451
	SRR8316897	Juvenile bud stage	0.112
	SRR8316894	Third green stage	0.223
	SRR8316900	Third green stage	0.048
	SRR8316901	Third green stage	0.255
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.442
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.385
	SRR8316904	Silver flowering stage	0.288
	SRR8316905	Silver flowering stage	0.536
	SRR8316906	Gold flowering stage	2.900
	SRR8316907	Gold flowering stage	2.789
	SRR8316908	Gold flowering stage	1.649
SRP132670	SRR6706286	Control	0.099
	SRR6706287	Light intensity 50%	0.083
	SRR6706288	Light intensity 20%	0.107
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.770
	CNS0095593	Slightly white alabastrum(diploid) 2	0.135
	CNS0095594	Slightly white alabastrum(diploid) 3	0.420
	CNS0095595	Whole white alabastrum(diploid) 2	0.180
	CNS0095596	Whole white alabastrum(diploid) 3	0.042
	CNS0095597	Whole white alabastrum(diploid) 4	0.425
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.655
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.270
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.623
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.199
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.223
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.518
	CNS0095610	Silvery flower (tetraploid) 1	0.446
	CNS0095611	Silvery flower (tetraploid) 2	0.142
	CNS0095612	Silvery flower (tetraploid) 3	0.184
	CNS0095613	Golden flower (tetraploid) 1	3.435
	CNS0095614	Golden flower (tetraploid) 2	1.032
	CNS0095615	Golden flower (tetraploid) 3	0.671
CRA001975	CRR073297	Stem 1	0.431
	CRR073298	Stem 2	0.278
	CRR073299	Stem 3	0.153
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.140
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.327
	CRR073304	Juvenile bud 2	0.059
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.611
	CRR073307	Third green 2	0.510
	CRR073308	Third green 3	0.888
	CRR073309	Second white 1	1.693
	CRR073310	Second white 2	0.500
	CRR073311	Second white 3	1.888
	CRR073312	Silver flowering 1	0.511
	CRR073313	Silver flowering 2	1.523
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.113
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.199
	CRR073320	Tawny withering 3	1.224