Gene detail

Detail information of GWHGAAZE016064

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664170.1	0	PREDICTED: DNA topoisomerase 2-binding protein 1-A isoform X1 [Vitis vinifera]
trEMBL	tr\|E6NU78\|E6NU78_JATCU	0	JMS09K11.6 protein {ECO:0000313\|EMBL:BAJ53188.1}
TAIR10	AT1G77320.1	2E-171	transcription coactivators

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	68265407	68283949	+
GWHAAZE00000004	mRNA	68265407	68283949	+
GWHAAZE00000004	exon	68265407	68265572	+
GWHAAZE00000004	exon	68265973	68266015	+
GWHAAZE00000004	exon	68266980	68267101	+
GWHAAZE00000004	exon	68269356	68269463	+
GWHAAZE00000004	exon	68271803	68271947	+
GWHAAZE00000004	exon	68272593	68272676	+
GWHAAZE00000004	exon	68273304	68273781	+
GWHAAZE00000004	exon	68274192	68274334	+
GWHAAZE00000004	exon	68275337	68275520	+
GWHAAZE00000004	exon	68275596	68275674	+
GWHAAZE00000004	exon	68277567	68277734	+
GWHAAZE00000004	exon	68280945	68281352	+
GWHAAZE00000004	exon	68281452	68281496	+
GWHAAZE00000004	exon	68282099	68282184	+
GWHAAZE00000004	exon	68282642	68282732	+
GWHAAZE00000004	exon	68283191	68283411	+
GWHAAZE00000004	exon	68283870	68283949	+
GWHAAZE00000004	five_prime_UTR	68265407	68265431	+
GWHAAZE00000004	CDS	68265432	68265572	+
GWHAAZE00000004	CDS	68265973	68266015	+
GWHAAZE00000004	CDS	68266980	68267101	+
GWHAAZE00000004	CDS	68269356	68269463	+
GWHAAZE00000004	CDS	68271803	68271947	+
GWHAAZE00000004	CDS	68272593	68272676	+
GWHAAZE00000004	CDS	68273304	68273781	+
GWHAAZE00000004	CDS	68274192	68274334	+
GWHAAZE00000004	CDS	68275337	68275520	+
GWHAAZE00000004	CDS	68275596	68275674	+
GWHAAZE00000004	CDS	68277567	68277734	+
GWHAAZE00000004	CDS	68280945	68281352	+
GWHAAZE00000004	CDS	68281452	68281496	+
GWHAAZE00000004	CDS	68282099	68282184	+
GWHAAZE00000004	CDS	68282642	68282732	+
GWHAAZE00000004	CDS	68283191	68283268	+
GWHAAZE00000004	three_prime_UTR	68283269	68283411	+
GWHAAZE00000004	three_prime_UTR	68283870	68283949	+

Transcript Sequence
>GWHTAAZE016084 AACGTTCAAAGGAGCAAATGTGTTCATGTCTCGGAATTTAGTACCCCCGGAGATGTTCGATTCACTTCACGACGCTCTCAAGCACAACGGAGCCGATGTTTTTCTCTGCTGCGATCCCTCTCGCAATGGACCTAACGATTATCACCTCATCTCTTCTCTCGATCATGAAAAGTTCAATCACCTCCGTGAACAGGGTTGTAATTTGCTAGGCCCTCAATGTGTTCTTTCTTGTGCAAAAGAACACAGAATGCTGCCTAAACAAGGTTTCACTTGTTGTCTTGCAATGGATGGGGTCAAAGTGCTGACATCTGGTTTTGAGATGAATGAAAAGGTTGAGATTGGAAAGTTGGTGACGGCTATGGGAGGTGTATTGCTTTCCAAAGCATCGTCAGATGTTAGCTTTGTCATTGTGAAAAATGTCTTGGCTGCGAAGTACAAGTGGGCCTTAAACATTGTAAAGAAACCAATTGTCACTATAAATTGGCTACATCAGTGCTGGAAAGAGCACCGTGTTGTTCCTCAGGATTCATACAGGGTTCTTCCTTTTTCTGGATTGACAATCTGTGTCACCAAAATCCCCGCAGGTGACAAATACAAGGTTGCCAAACGATGGGGTCACATTTATATTGTTGCTAGGAGATGGTTTGATCAATCTGTTGCTAGAAGAGCATATCTTAATGAGGAGTCCTACCCGGTCCAGACTAGTTCTACTCCTTCAATGAATACCAGAAAAAATACTCTGACAGCACAGCGTAGCCAAGACGTTGGAAATTTTCAAAGTGCCCCATCTTCTGTGGCCACAGATGCAAATGTACAAGCTGCTTTATGCAATGGAATGTTGGATCCAGACCTAGAAGCTACTCTCTCACAGAATATGTCTTCTACGTTTTCAGATGTTCCTGTATTTGTAAAGGAGGACAGTGGAGTGCAACAAAGAAATGATATAAATTTTGATGGTTGTGTTGCCGATGATTCTCAAACTGATGACAACGATTTGTACCTGTCCAATTGTAGAATTCTACTTGTTGGTTTTGATGCCTCCGAAATGCGTAAACTAGTCAACATGGTTCGCAGAGGTGGTGGGTCCCGTTATATGGCGTTTAATGAAAAATTGACGCACATAGTTGTTGGAACTCCTTCAGAGAGTGAGAAAAAAGAAGTAAGGGGCCTTGCAGCTTTGGGTGTTATCTATGTTGTTAGAACCGTGTGGCTTGAAGATTGTGATCGTGAAAAGAAAGAGATTCCTGTATCTCAAAGGCACATTGCATCTGACTTGCTTCTTCCGAAAGATTCTAAATCCTACAATAAGGGAGTTGTGTTGGGCATGAACGGAATGAAAGAAGGGAAACCCTATAGCGTTCACTCTATCCTGCCTGATGAACAGTTACAGAGAAGTATGAATTCTGGAGCTGTAATGTCATCAGAAAAGAGCAAAGAGCTACAAAGGGACAGCTCTCTAGGAGCAACAACGAGCAACCTAATTCAGGATAGGAAACCAGGTGTTTTCTCGGGGAGGCTATTTCGCTTTTCCAGTTCCTTTCCTGAAGATCGGAGAATGGAAATTGTGGAGTGGATTAACCAAGGGGGAGGAGAGGTGGTGGTTGATCCGACTGAAAAAAATGTGCACTTCACTGTTGAGTGTCATGGTGCTGTACACACCCCTACTAATATTTCAGGAAGTATCAACGTGTCCAGTCACTGGATTCGGTCTTGTTTAGAGAATGCGGTCATTGGTACTGGTCCATTTTGTCCAAAAGAAGTTACTTCTCAAGACCGAGAGGCTGGATTATGCACTATGAGCCAGTATCCTACACAAGCGGTTAGAATGTCCTCTGGTGAGGATGCATCCCAGTTCCCAAGCCAATCCCATGACCCAAGAAATATTCAAAACCAAGTAAATGGTACCAGGAGCGACATTTTCAGAGAAGACGCCAAATATTCAAACACTTGCACTAAAAGGGCAAGGCTTTTGGAAGATGTCCGCCTAAAGGATTCTATACCTTCTGCAGTAAATTCAAATGATCGAAATATTTTCGAGAATAAGATAATTGGCAATGGTGGGGAAGTTTTCAATGCAGTTCCGGATGTAGCTGCTGCTATTGAAGATTTGTTGGAGCAAACGAGCAAGATTCATGACCAGAACTCGCCAGAGAGGAATGGATGCGATAAAAGTCTTTTTTCGTCTGATTGTCCCATCATTGGTCAAGACCGTGTGGATCCTCAACCTGCCTTTGGATTGTCTAAGCAGTGGATAAACAGGAGTGACAAAAAGGATGAGAGTAGTAATCGTTCAAGAGACTTAAATGCAGGCATTTATGATGGTTTCAGTGAAACGCAAACAGAATCACAGGTTGTCGGGTATGAAGAAGATTTGTCTGGCAGGCAAATGATAATAGACAGAGTTCGAACACGTAGTAGCATGACTTGAACTTGTTTATAGCAAATATCCATTGGGATAGAAAATGAGAATACGAGAAGTGAAGAAAAGGAAATCATATTGACACTGAGCACAAGTAAATTCGTGGTGAACTCTAATCATCCTAACCTTGAACCGCTTTTGGCTAATGTAAGTCTCTGTCCATTTCAAAGCTATAAGAAGAGGAATTTAGTTGATTTTAGGTGAGATGGTACAGCCATCTCAACCAACTACA

Network for GWHGAAZE016064

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.8	PTCB-BRCT	91	153	7.70E-06
PF00533.27	BRCT	323	399	3.90E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10728	TOPBP1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.343
	SRR3591706	second leaf	1.774
	SRR3591707	mature leaf	1.927
	SRR3591708	Shoot apex	7.491
	SRR3591709	Stem	4.522
	SRR3591710	White floral bud	3.224
	SRR3591711	White flower	4.224
	SRR3591712	Green floral bud	3.659
	SRR3591713	Yellow flower	2.628
SRP173429	SRR8316895	Juvenile bud stage	2.244
	SRR8316896	Juvenile bud stage	2.496
	SRR8316897	Juvenile bud stage	1.303
	SRR8316894	Third green stage	1.256
	SRR8316900	Third green stage	2.960
	SRR8316901	Third green stage	2.357
	SRR8316898	Complete white stage	0.540
	SRR8316899	Complete white stage	2.986
	SRR8316903	Complete white stage	1.388
	SRR8316902	Silver flowering stage	0.921
	SRR8316904	Silver flowering stage	0.789
	SRR8316905	Silver flowering stage	0.321
	SRR8316906	Gold flowering stage	0.741
	SRR8316907	Gold flowering stage	0.492
	SRR8316908	Gold flowering stage	0.803
SRP132670	SRR6706286	Control	1.656
	SRR6706287	Light intensity 50%	1.732
	SRR6706288	Light intensity 20%	1.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.897
	CNS0095593	Slightly white alabastrum(diploid) 2	1.636
	CNS0095594	Slightly white alabastrum(diploid) 3	2.544
	CNS0095595	Whole white alabastrum(diploid) 2	1.022
	CNS0095596	Whole white alabastrum(diploid) 3	0.608
	CNS0095597	Whole white alabastrum(diploid) 4	1.140
	CNS0095598	Silvery flower (diploied) 1	2.533
	CNS0095599	Silvery flower (diploied) 2	1.709
	CNS0095600	Silvery flower (diploied) 3	1.269
	CNS0095601	Golden flower (diploid) 1	2.744
	CNS0095602	Golden flower (diploid) 2	1.951
	CNS0095603	Golden flower (diploid) 3	2.501
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.055
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.388
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.917
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.482
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.418
	CNS0095610	Silvery flower (tetraploid) 1	1.629
	CNS0095611	Silvery flower (tetraploid) 2	2.675
	CNS0095612	Silvery flower (tetraploid) 3	1.787
	CNS0095613	Golden flower (tetraploid) 1	0.560
	CNS0095614	Golden flower (tetraploid) 2	1.543
	CNS0095615	Golden flower (tetraploid) 3	0.652
CRA001975	CRR073297	Stem 1	2.869
	CRR073298	Stem 2	2.327
	CRR073299	Stem 3	1.796
	CRR073300	Leaf 1	2.373
	CRR073301	Leaf 2	2.134
	CRR073302	Leaf 3	0.815
	CRR073303	Juvenile bud 1	1.294
	CRR073304	Juvenile bud 2	0.500
	CRR073305	Juvenile bud 3	1.159
	CRR073306	Third green 1	0.163
	CRR073307	Third green 2	0.146
	CRR073308	Third green 3	0.132
	CRR073309	Second white 1	0.121
	CRR073310	Second white 2	0.191
	CRR073311	Second white 3	0.196
	CRR073312	Silver flowering 1	0.094
	CRR073313	Silver flowering 2	0.018
	CRR073314	Silver flowering 3	0.193
	CRR073315	Gold flowering 1	0.638
	CRR073316	Gold flowering 2	2.088
	CRR073317	Gold flowering 3	0.432
	CRR073318	Tawny withering 1	1.500
	CRR073319	Tawny withering 2	2.183
	CRR073320	Tawny withering 3	1.602