Gene detail

Detail information of GWHGAAZE016058

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011102142.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Sesamum indicum]
Swissprot	tr\|Q9LV48\|PERK1_ARATH	4E-80	Proline-rich receptor-like protein kinase PERK1
trEMBL	tr\|A0A068UTQ8\|A0A068UTQ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_61 {ECO:0000313\|EMBL:CDP11935.1}
TAIR10	AT1G77280.1	0	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	68131922	68137947	-
GWHAAZE00000004	mRNA	68131922	68137947	-
GWHAAZE00000004	exon	68137498	68137947	-
GWHAAZE00000004	exon	68137104	68137201	-
GWHAAZE00000004	exon	68136426	68136675	-
GWHAAZE00000004	exon	68135202	68135885	-
GWHAAZE00000004	exon	68134448	68134696	-
GWHAAZE00000004	exon	68133846	68134009	-
GWHAAZE00000004	exon	68133672	68133751	-
GWHAAZE00000004	exon	68132791	68132938	-
GWHAAZE00000004	exon	68132549	68132698	-
GWHAAZE00000004	exon	68131922	68132218	-
GWHAAZE00000004	five_prime_UTR	68137643	68137947	-
GWHAAZE00000004	CDS	68137498	68137642	-
GWHAAZE00000004	CDS	68137104	68137201	-
GWHAAZE00000004	CDS	68136426	68136675	-
GWHAAZE00000004	CDS	68135202	68135885	-
GWHAAZE00000004	CDS	68134448	68134696	-
GWHAAZE00000004	CDS	68133846	68134009	-
GWHAAZE00000004	CDS	68133672	68133751	-
GWHAAZE00000004	CDS	68132791	68132938	-
GWHAAZE00000004	CDS	68132549	68132698	-
GWHAAZE00000004	CDS	68131922	68132218	-

Transcript Sequence
>GWHTAAZE016078 CGAGGCTAGTGTAAACAGTATTTACTGGCAGGTATTAATGTAGTGAGAGAGAGTTCGTTTCCCTGTCTCTCAAGGCAACAACCAACTCTAGCTGCTGCTGCTGTTTCTTCTTGCTTGCTGGTACCCTATCGCTCAGGAGTGAGCCCCAATCCCCTGCCTGACAAACTTGCAAATCAAACTCAAATCATAAACAAAAAAAGGCGACTCTTTAAGCTTCATAAATCCCTTCTTATACTGAATCCAAATGAGGCCTAATCACCAGACCAAACTCACCTGAATCTGAGCTCACCCCACTTTTGATAAATATGACTCTCGCCGGAGAAGAGTGCCGGACGGTGGTGGTGGGAGTGAATTTGGACTCTGAGAGCAGAGAGTTGCTCACTTGGGCTTTGGTCAAAGTAGCCCAGCCTGGTGACCGTGTCATTGCCCTTCATGTTCTAGCTTCCAATGAAATTGTGGATCGAGATGGGAAGTCCTCTCTGCTATCTCTTTTCAAAGCTTTTGACTCTGTTCTTGCTGTGTATGAAGGTTTCTGCAATTTGAAACAGGTGGATCTCAAGCTCAAGATTTGCAGAGGTTCATCAATCCGAAAAATTCTGGTTCGAGAAGCGAAATCTTACTTTGCTACTGAGATTATAGTGGGAACTGCGAGAAATCATCATACAATCCGGTCATCGGCCTCTGTTGCAAAGTACTGTGCCAAGAAACTGCAAAAAGATTGTACAATTCTAGCTATTAATAATGGGAAAATTGTGTTTCATAGAGAATCCTCTTCTGGTTCTAATTTCAATGCAAAAGATCATCATCGAAACGGTTTCCTTGGCGCAATACAGAGGAAATTGAGCAAGAATTCCAAAATACTAAATGATAGTAACGAGTTGAAGCCCAATCAAATTTCTTTTGGGAATTTTGATCTAGCTTTAGCAAAATTCGGTTCTGATAGACTTGAGAATGTGGTTAAAAAGAGCTGTTCAATTTGTTCACCTGAATCCAATTGTGCTAATAATACTTGTACCCAAGAAAAGGAGGATGATGCTGTAGATAACTCGATGGCTTTGGTGCCGGTAAAACAACCAGAAGCTGCTTCTAGTTCGATATCTCTATTGATAAAAGAATTGCCTGAACCAAGGCCCGGTTGGCCGCTTCTTCGCCGAGCCATTGTGTCAAACCGAAAGGCTTCGGTTCGAAAGATCTCAGTGGTTGAATGGGTAATGAGGCTACCCAATAGACGAATTTTGCAAATTACGAATTCGGATGAGAAAGAAAGTGGTGGTGATTGTGAAGATCGGTCTAGTGAGCTAGATGGAGAAAGTGGTGCTATTGTTCTTGTTGGTAATGAGACTGGGTCTATATGTTCTTCTCCAAGTTATAGTTCAACAAGCTTACCGAAAGAATTGGAAGGTCTTCATGAGAAATATGCTGCTACTTGTAGATTGTTTAAATACCAAGAACTTCTCTCAGCAACATCGAATTTTAAGCCAGAGAATATGATTGGAAAAGGAGGCAGCAGCCAGGTTTATAGAGGTTATCTTCCCGACAGCAAAGAACTTGCGGTTAAAATTTTGAAGCCATCTGAAGATGTATTGAAAGAGTTTGTTCTTGAAATCGAGATAATTACTACTTTAAATCACAAAAACATCATTTCACTTTTCGGATTCTGTTTTGAGGACAACAATCTCCTTTTGGTTTATGATTTCTTATCGAGAGGAAGCCTTGAAGAGAATCTTCATGGTAATAAAAAGGATCAGCTAGCGTTTGGATGGCGAGAGAGATACAAGGTGGCTGTGGGTGTAGCTGAGGCACTGCAATATCTACACAATATAAGTGATCAATCCGTCATACACAGGGATGTTAAATCATCAAACATACTACTCTCCGATGATTTCGAGCCACAGCTATCGGATTTTGGACTTGCTAAATGGGCATCAACTACCTCATCACATATAACTTGCACCGATGTTGCGGGAACTTTCGGTTATTTAGCTCCTGAATATTTCATGTACGGCAAAGTGAATGACAAGATTGATGTGTATGCATTTGGAGTCGTTCTTCTTGAACTTCTTTCTGGAAGAAAGCCTATAAGTAATGAATATCCCAAGGGCCAAGAGAGCTTGGTTATGTGGGCAAAGCCGATTCTAAATGGCGGAAAATTTACCCAATTATTGGACTCAACCTTGGGCAATGACTACGATCATGACCAGATGGAGAGGATGGTTTTAGCTGCTACTCTTTGTATTCGACGTTCGCCTCGAGCTCGGCCCCAAATGAGCCTGGTTCTAAAGCTCCTCCAAGGAGATGTGGAGATGATCAAATGGGCAAGACTACAAGTCAACGCCTTGGAAGGCGCCGATGGAAGTATACAAGTCAACGCTTTCGAGGGCTCTGATTCATTGGACGATGAAGGCTACTTGCCTTCGAACCTACAGTCGCATCTGAACCTACAGTCGCATCTGAACCTTGCATTTAAGGACATGGAGGAGGAGTCGCTCTCAATGAGTAGCATCGCGCAAAGAGTCTCGTTAGAGGACTACTTGAAAGGCAGGTGGAGCCGATCTTCGAGCTTCGACTAA

Network for GWHGAAZE016058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00582.27	Usp	9	141	4.70E-09
PF00069.26	Pkinase	392	600	7.30E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.629
	SRR3591706	second leaf	58.260
	SRR3591707	mature leaf	38.565
	SRR3591708	Shoot apex	34.462
	SRR3591709	Stem	28.566
	SRR3591710	White floral bud	31.680
	SRR3591711	White flower	15.573
	SRR3591712	Green floral bud	50.310
	SRR3591713	Yellow flower	7.155
SRP173429	SRR8316895	Juvenile bud stage	9.222
	SRR8316896	Juvenile bud stage	13.786
	SRR8316897	Juvenile bud stage	3.249
	SRR8316894	Third green stage	11.644
	SRR8316900	Third green stage	48.319
	SRR8316901	Third green stage	39.209
	SRR8316898	Complete white stage	8.880
	SRR8316899	Complete white stage	46.263
	SRR8316903	Complete white stage	15.064
	SRR8316902	Silver flowering stage	1.338
	SRR8316904	Silver flowering stage	5.792
	SRR8316905	Silver flowering stage	1.245
	SRR8316906	Gold flowering stage	2.268
	SRR8316907	Gold flowering stage	3.726
	SRR8316908	Gold flowering stage	5.969
SRP132670	SRR6706286	Control	17.881
	SRR6706287	Light intensity 50%	16.688
	SRR6706288	Light intensity 20%	18.010
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.521
	CNS0095593	Slightly white alabastrum(diploid) 2	8.553
	CNS0095594	Slightly white alabastrum(diploid) 3	3.764
	CNS0095595	Whole white alabastrum(diploid) 2	8.335
	CNS0095596	Whole white alabastrum(diploid) 3	10.860
	CNS0095597	Whole white alabastrum(diploid) 4	5.891
	CNS0095598	Silvery flower (diploied) 1	11.439
	CNS0095599	Silvery flower (diploied) 2	5.468
	CNS0095600	Silvery flower (diploied) 3	6.791
	CNS0095601	Golden flower (diploid) 1	5.828
	CNS0095602	Golden flower (diploid) 2	9.862
	CNS0095603	Golden flower (diploid) 3	8.541
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.739
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.976
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.786
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.097
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.165
	CNS0095610	Silvery flower (tetraploid) 1	21.341
	CNS0095611	Silvery flower (tetraploid) 2	18.225
	CNS0095612	Silvery flower (tetraploid) 3	6.989
	CNS0095613	Golden flower (tetraploid) 1	2.132
	CNS0095614	Golden flower (tetraploid) 2	32.446
	CNS0095615	Golden flower (tetraploid) 3	6.887
CRA001975	CRR073297	Stem 1	38.090
	CRR073298	Stem 2	43.520
	CRR073299	Stem 3	41.564
	CRR073300	Leaf 1	49.733
	CRR073301	Leaf 2	32.298
	CRR073302	Leaf 3	43.150
	CRR073303	Juvenile bud 1	34.919
	CRR073304	Juvenile bud 2	27.018
	CRR073305	Juvenile bud 3	21.021
	CRR073306	Third green 1	3.774
	CRR073307	Third green 2	4.218
	CRR073308	Third green 3	7.552
	CRR073309	Second white 1	1.388
	CRR073310	Second white 2	2.652
	CRR073311	Second white 3	0.533
	CRR073312	Silver flowering 1	0.093
	CRR073313	Silver flowering 2	0.419
	CRR073314	Silver flowering 3	0.506
	CRR073315	Gold flowering 1	1.946
	CRR073316	Gold flowering 2	2.607
	CRR073317	Gold flowering 3	3.653
	CRR073318	Tawny withering 1	17.417
	CRR073319	Tawny withering 2	7.730
	CRR073320	Tawny withering 3	22.003