Gene detail

Detail information of GWHGAAZE016041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605412.1	1.7597E-162	PREDICTED: myb domain-containing protein YDR026C-like [Nicotiana tomentosiformis]
trEMBL	tr\|V4UEM1\|V4UEM1_9ROSI	7E-154	Uncharacterized protein {ECO:0000313\|EMBL:ESR37759.1} (Fragment)
TAIR10	AT5G41020.1	1E-106	myb family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	67492381	67494001	+
GWHAAZE00000004	mRNA	67492381	67494001	+
GWHAAZE00000004	exon	67492381	67492606	+
GWHAAZE00000004	exon	67493097	67494001	+
GWHAAZE00000004	CDS	67492381	67492606	+
GWHAAZE00000004	CDS	67493097	67494001	+

Transcript Sequence
>GWHTAAZE016061 ATGGGCGTGAGATTAGATGAGGAGGAGACTGTGGTCAAGGATACGGTGAAAAAGTCTAAGCACAGCAAGAAGAATGAGATGAATGATTTGAAAGAAAATAGTTTTACATCGAGCGAAGGAGCTGAGCAAAGGAAGAGAAAGAAGAAACGAGGGGTTAGTGGTGATATTGAACTTGATAATGCCCTTGACGAAGTTGAAAATAGAAAGGGTTGTGCAGAAGTGGATGCGGGCAAATTAAGCACCAGAAATAAAGAAAACTTGGAAGATGATGAGTTAGTGCGAGGCAAGCGATTCTCGGCCGAGGAAGATGAGATGATTCAAGAAGCCGTTCAAAACTACATAGACACACATAACTTGGGTGAAGAAGGGTTGAACAAGGTTCTCAACTGTAGTTCTCATCCTGAATTAAAAAATTGTTGGAAGGAAATAGGCGCAGCTATACCGTACAGGCCATTTAGAGCAATTTATTACCGAGCCCATATTTTGTTTGAGAGGGGGGAGACTCGTAAATGGACACAAGAAGAGTATGAATTCATCAAAAAGGTTCAAGAGAAACATGGCAACAATTGGAAACTAATCGCTGATGAGCTCGGCAAGCACCGGTTTCATGTTAAGGACACGTGGCGAAGAATAAAGCTAGCCAACGTGAAGAAAGGGCACTGGTCCCAGGAGGAGTACCAGACCTTATTTGATCTAGTCAACACGGACTTGCAAATGAAAGCGTCTGAGGAAAAGAAGTCAAAGCACGGAATGTTGAGAGATAATATCTGTTGGGGAGCGATTAGCGACAAGTTGTCCACGCGTACAAATCAAACCTGTTGCCGCAAATGGTACACGCAGTTGACCTCGTCGATGGTAGAGGAAGGGATATGGGCTGACGTGGATGATTATCGCTTGCTTGATGCCCTGTTTAATTTAGACGCGTGTTGTGTGGAGGACGTTGATTGGGACAGTCTTCTGGAGCACCGGTCTGGTGAGGTGTGCCGGAAGCGGTGGGATCAGATGGTGCGCCACATAGGCCTACATGGGCTCAAGTCATTTAGCGAACAAGTCGATATTCTAGCGAAACGATATTGTCCGGCTTTAGTTGAAGCAAGAGAAGAGTGGGATAGCAAACCTAGGGTTGATTAA

Network for GWHGAAZE016041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	171	229	8.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.945
	SRR3591706	second leaf	2.990
	SRR3591707	mature leaf	4.929
	SRR3591708	Shoot apex	6.339
	SRR3591709	Stem	5.000
	SRR3591710	White floral bud	9.527
	SRR3591711	White flower	10.106
	SRR3591712	Green floral bud	10.054
	SRR3591713	Yellow flower	8.693
SRP173429	SRR8316895	Juvenile bud stage	6.963
	SRR8316896	Juvenile bud stage	10.921
	SRR8316897	Juvenile bud stage	6.658
	SRR8316894	Third green stage	3.836
	SRR8316900	Third green stage	11.309
	SRR8316901	Third green stage	11.021
	SRR8316898	Complete white stage	3.464
	SRR8316899	Complete white stage	11.510
	SRR8316903	Complete white stage	7.641
	SRR8316902	Silver flowering stage	3.627
	SRR8316904	Silver flowering stage	5.891
	SRR8316905	Silver flowering stage	2.562
	SRR8316906	Gold flowering stage	9.169
	SRR8316907	Gold flowering stage	9.971
	SRR8316908	Gold flowering stage	11.126
SRP132670	SRR6706286	Control	9.456
	SRR6706287	Light intensity 50%	10.257
	SRR6706288	Light intensity 20%	9.152
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.410
	CNS0095593	Slightly white alabastrum(diploid) 2	15.091
	CNS0095594	Slightly white alabastrum(diploid) 3	15.363
	CNS0095595	Whole white alabastrum(diploid) 2	10.208
	CNS0095596	Whole white alabastrum(diploid) 3	11.219
	CNS0095597	Whole white alabastrum(diploid) 4	7.828
	CNS0095598	Silvery flower (diploied) 1	13.229
	CNS0095599	Silvery flower (diploied) 2	13.225
	CNS0095600	Silvery flower (diploied) 3	10.903
	CNS0095601	Golden flower (diploid) 1	17.962
	CNS0095602	Golden flower (diploid) 2	11.768
	CNS0095603	Golden flower (diploid) 3	11.321
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.093
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.341
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.713
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.624
	CNS0095610	Silvery flower (tetraploid) 1	14.352
	CNS0095611	Silvery flower (tetraploid) 2	12.573
	CNS0095612	Silvery flower (tetraploid) 3	10.891
	CNS0095613	Golden flower (tetraploid) 1	13.058
	CNS0095614	Golden flower (tetraploid) 2	14.767
	CNS0095615	Golden flower (tetraploid) 3	11.157
CRA001975	CRR073297	Stem 1	15.338
	CRR073298	Stem 2	12.672
	CRR073299	Stem 3	12.086
	CRR073300	Leaf 1	14.173
	CRR073301	Leaf 2	14.335
	CRR073302	Leaf 3	6.917
	CRR073303	Juvenile bud 1	10.334
	CRR073304	Juvenile bud 2	7.100
	CRR073305	Juvenile bud 3	8.841
	CRR073306	Third green 1	2.975
	CRR073307	Third green 2	3.368
	CRR073308	Third green 3	3.690
	CRR073309	Second white 1	1.874
	CRR073310	Second white 2	4.504
	CRR073311	Second white 3	4.111
	CRR073312	Silver flowering 1	2.371
	CRR073313	Silver flowering 2	2.119
	CRR073314	Silver flowering 3	2.895
	CRR073315	Gold flowering 1	4.758
	CRR073316	Gold flowering 2	5.447
	CRR073317	Gold flowering 3	0.931
	CRR073318	Tawny withering 1	11.155
	CRR073319	Tawny withering 2	10.488
	CRR073320	Tawny withering 3	7.811