Detail information of GWHGAAZE016040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645962.12.2388E-172PREDICTED: peroxisome biogenesis protein 1 isoform X3 [Vitis vinifera]
Swissprottr|Q9FNP1|PEX1_ARATH5E-119Peroxisome biogenesis protein 1
trEMBLtr|F6H2Q4|F6H2Q4_VITVI2E-171Putative uncharacterized protein {ECO:0000313|EMBL:CCB46496.1}
TAIR10AT5G08470.11E-97peroxisome 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6745724467471520-
GWHAAZE00000004mRNA6745724467471520-
GWHAAZE00000004exon6747120567471520-
GWHAAZE00000004exon6746952167469694-
GWHAAZE00000004exon6746734667467445-
GWHAAZE00000004exon6746575467466236-
GWHAAZE00000004exon6746320667463961-
GWHAAZE00000004exon6746178567461876-
GWHAAZE00000004exon6745781867457891-
GWHAAZE00000004exon6745724467457298-
GWHAAZE00000004five_prime_UTR6747140967471520-
GWHAAZE00000004CDS6747120567471408-
GWHAAZE00000004CDS6746952167469694-
GWHAAZE00000004CDS6746734667467445-
GWHAAZE00000004CDS6746575467466236-
GWHAAZE00000004CDS6746363967463961-
GWHAAZE00000004three_prime_UTR6746320667463638-
GWHAAZE00000004three_prime_UTR6746178567461876-
GWHAAZE00000004three_prime_UTR6745781867457891-
GWHAAZE00000004three_prime_UTR6745724467457298-
Transcript Sequence

Network for GWHGAAZE016040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09262.12PEX-1N981721.90E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13338PEX1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0007031biological_processperoxisome organization
GO:0005777cellular_componentperoxisome
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.186
SRR3591706second leaf2.608
SRR3591707mature leaf2.658
SRR3591708Shoot apex2.854
SRR3591709Stem2.864
SRR3591710White floral bud2.693
SRR3591711White flower3.251
SRR3591712Green floral bud2.313
SRR3591713Yellow flower3.323
SRP173429 SRR8316895Juvenile bud stage 2.179
SRR8316896Juvenile bud stage 2.948
SRR8316897Juvenile bud stage 1.120
SRR8316894Third green stage 2.070
SRR8316900Third green stage 3.157
SRR8316901Third green stage 2.801
SRR8316898Complete white stage 0.720
SRR8316899Complete white stage 4.323
SRR8316903Complete white stage 2.673
SRR8316902Silver flowering stage1.614
SRR8316904Silver flowering stage2.727
SRR8316905Silver flowering stage1.185
SRR8316906Gold flowering stage 4.054
SRR8316907Gold flowering stage 3.205
SRR8316908Gold flowering stage 3.266
SRP132670SRR6706286Control3.466
SRR6706287Light intensity 50%3.937
SRR6706288Light intensity 20%3.464
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.685
CNS0095593Slightly white alabastrum(diploid) 20.349
CNS0095594Slightly white alabastrum(diploid) 31.097
CNS0095595Whole white alabastrum(diploid) 21.118
CNS0095596Whole white alabastrum(diploid) 30.656
CNS0095597Whole white alabastrum(diploid) 40.642
CNS0095598Silvery flower (diploied) 12.657
CNS0095599Silvery flower (diploied) 21.965
CNS0095600Silvery flower (diploied) 35.435
CNS0095601Golden flower (diploid) 12.038
CNS0095602Golden flower (diploid) 24.834
CNS0095603Golden flower (diploid) 34.293
CNS0095604Slightly white alabastrum(tetraploid) 10.888
CNS0095605Slightly white alabastrum(tetraploid) 20.612
CNS0095606Slightly white alabastrum(tetraploid) 33.276
CNS0095607Whole white alabastrum(tetraploid) 10.509
CNS0095608Whole white alabastrum(tetraploid) 20.235
CNS0095609Whole white alabastrum(tetraploid) 32.533
CNS0095610Silvery flower (tetraploid) 14.643
CNS0095611Silvery flower (tetraploid) 26.090
CNS0095612Silvery flower (tetraploid) 33.494
CNS0095613Golden flower (tetraploid) 12.685
CNS0095614Golden flower (tetraploid) 23.968
CNS0095615Golden flower (tetraploid) 33.221
CRA001975CRR073297Stem 13.021
CRR073298Stem 21.949
CRR073299Stem 32.355
CRR073300Leaf 12.323
CRR073301Leaf 22.006
CRR073302Leaf 32.594
CRR073303Juvenile bud 11.644
CRR073304Juvenile bud 21.288
CRR073305Juvenile bud 33.323
CRR073306Third green 10.404
CRR073307Third green 20.875
CRR073308Third green 30.638
CRR073309Second white 10.973
CRR073310Second white 20.918
CRR073311Second white 31.183
CRR073312Silver flowering 10.760
CRR073313Silver flowering 20.873
CRR073314Silver flowering 30.858
CRR073315Gold flowering 11.132
CRR073316Gold flowering 22.641
CRR073317Gold flowering 32.277
CRR073318Tawny withering 12.013
CRR073319Tawny withering 21.215
CRR073320Tawny withering 31.817