Gene detail

Detail information of GWHGAAZE016039

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011102051.1	PREDICTED: peroxisome biogenesis protein 1 isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9FNP1\|PEX1_ARATH	Peroxisome biogenesis protein 1
trEMBL	tr\|F6H2Q4\|F6H2Q4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46496.1}
TAIR10	AT5G08470.1	peroxisome 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	67451569	67463570	-
GWHAAZE00000004	mRNA	67451569	67463570	-
GWHAAZE00000004	exon	67463315	67463570	-
GWHAAZE00000004	exon	67461785	67461876	-
GWHAAZE00000004	exon	67460857	67461024	-
GWHAAZE00000004	exon	67457818	67457891	-
GWHAAZE00000004	exon	67457076	67457298	-
GWHAAZE00000004	exon	67456555	67456648	-
GWHAAZE00000004	exon	67456277	67456431	-
GWHAAZE00000004	exon	67454729	67454959	-
GWHAAZE00000004	exon	67454079	67454279	-
GWHAAZE00000004	exon	67453587	67453712	-
GWHAAZE00000004	exon	67453407	67453468	-
GWHAAZE00000004	exon	67453034	67453148	-
GWHAAZE00000004	exon	67451569	67451817	-
GWHAAZE00000004	CDS	67463315	67463570	-
GWHAAZE00000004	CDS	67461785	67461876	-
GWHAAZE00000004	CDS	67460857	67461024	-
GWHAAZE00000004	CDS	67457818	67457891	-
GWHAAZE00000004	CDS	67457076	67457298	-
GWHAAZE00000004	CDS	67456555	67456648	-
GWHAAZE00000004	CDS	67456277	67456431	-
GWHAAZE00000004	CDS	67454729	67454959	-
GWHAAZE00000004	CDS	67454079	67454279	-
GWHAAZE00000004	CDS	67453587	67453712	-
GWHAAZE00000004	CDS	67453407	67453468	-
GWHAAZE00000004	CDS	67453034	67453148	-
GWHAAZE00000004	CDS	67451569	67451817	-

Transcript Sequence
>GWHTAAZE016059 ATGCTTCACTTCGAGGTGAAAGGAAACCAATTTGCTAAAGATGGTAAACTACAGGGATCATATAGTGGTTCTTTAGGAAAAAGAAATAGAAATGAAGAGTCATTGGTAGATGTTCTTTATCTTCTGTCTGTTCCTGAGGAATCTCTGCATGTTGGAGAAGTTAATGGATATGAACTTCCATTTGATGAAGACAAAGGTGATAACACTAAGCTGAAAAGTTTAGAATTAATGCTTGGAAAGCTGCATTTGGGTGAAGGGTTGACACTGTTGCTATCTCCTGCTTCAGGGATGATGTTCAGTACTTATAACCTTCCTTTCCCTGGGCATGTTCTAATATATGGACCTCCGGACAAGGTCACTAAGAGGATTGAGAAATTGAAGAGGAGTTTTGGGTCAGGGTTTCCAAGGAGATCCCACAAGAGGAGGGATCATGTTATTAGTTGCTGTCTTGGTAGTCAACGTAGGGCTGAGGGCGGTTTGGAATTTAGCAATTCAGTGTTTAAAAGCACTTTCATGGGTTCTGGGAAAACGCTGTTAGCAACTGCTGTTGCAAAATCTGTTGAAGAACATGAAGACATCTTGGCACACATAGTATTTGTACCTTGTTCTAGACTTTCTTTGGATAAGTCCCCAACTATTCGTCAAACACTTTCTGGCTACATATCTGAAGCATTGGATCATGCACCTTCTGTTGTCATATTTGATGATTTCGATAGCATTATATCGTCTTCCTCTGACTCTGAAGGTTCTCAACCATCCTCATCTGTTATGGCGCTTACAGAGTTTCTTGCAGATATTATGGATGAATACGCGGAAAAGCGAAGGAGCTCTTGCGGGATTGGCCCCATAGCATTCATAGCTTCTGTACAAACCCTCAACAGTATACCTCAAAGTTTGACCTCGTCTGGAAGGTTTGACTTTCATGTGCAACTGCCTGCTCCTGCTGCTGCAGAACGTGGTGCTTTATTGAAACATGAAATCCATAAGCGTTCCTTACAATGTTCTGACGATGTCTTGCTGGATATAGCTTCCAAATGTGATGGATATGATGCTTATGATCTGGAAATACTAGTTGATAGGTCGGTCCATGCTGCCATTGGTCGCTTTGTGTCTCATAATTTGGGTTCTGGTGAACAAAATAAACCTACCTTAGTTGGGGATGATTTTTTGCAAGCAATGCACGAGTTTCTTCCAGTTGCTATGCGTGATGTTACTAAAGCTAGTTCAGAAGATGGTCGTGGTGGTTGGGAGAACGTTGGTGGTCTTACTGACATCCAGAACTCTATCAAAGAGATGATTGAGTTACCTTCAAAGTTCCCAAAAATATTTGCAAAAGCTCCTTTGAGGTTGCGGTCAAATGTTCTCTTATATGGTCCACCTGGCTGTGGGAAAACGCACATTATTGGTGCAGCTGCTGCTGCCTGTTCGCTACGATTCATCTCAGTGAAGGGACCCGAGCTACTTAATAAATACATTGGTGCTTCTGAGCAAGCTGTTCGTGATATATTCTCAAAAGCAGCTGGTGCAGCGCCATGCATTCTATTTTTTGATGAATTTGATTCCATCGCACCAAAGAGAGGGCATGACAATACTGGAGTTACTGATCGAGTTGTTAATCAATTTCTAACGGAATTAGACGGTGTGGAGGTCTTGACTGGTGTTTTTGTTTTTGCTGCCACCAGACCGGATTTACTCGATGCTGCACTGTTGCGACCTGGTAGGCTGGATCGACTTCTTTTCTGTGATTTCCCATCACCACGCGAGAGGTTGGATATTCTTACAGTTCTTTCTAGAAAGTTACCCTTGGCGGGTGATGTTGATTTGGAAGCCATAGCTCTTAAGACCGAAGGATTTAGCGGCGCTGACCTCCAAGCGCTTCTCTCAGATGCTCAACTTGCTGCTGTTCACGAAATTTTGAACAGTAAAGATAGTGAAAAGGCAGGGAAAATGCCTGTCATTACCGACACTATCTTACAATCTGTTGCTTCCAATGCAAGGCCATCAGTTTCAGAAGCCGAGAAACGCCGATTATATGGCATTTACAGC

Network for GWHGAAZE016039

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	172	312	8.90E-12
PF00004.30	AAA	454	580	7.70E-38
PF17862.2	AAA_lid_3	605	641	1.60E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13338	PEX1	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.621
	SRR3591706	second leaf	3.862
	SRR3591707	mature leaf	4.355
	SRR3591708	Shoot apex	5.080
	SRR3591709	Stem	4.051
	SRR3591710	White floral bud	3.800
	SRR3591711	White flower	4.326
	SRR3591712	Green floral bud	4.020
	SRR3591713	Yellow flower	4.080
SRP173429	SRR8316895	Juvenile bud stage	2.938
	SRR8316896	Juvenile bud stage	4.352
	SRR8316897	Juvenile bud stage	2.489
	SRR8316894	Third green stage	2.303
	SRR8316900	Third green stage	4.278
	SRR8316901	Third green stage	3.965
	SRR8316898	Complete white stage	1.238
	SRR8316899	Complete white stage	5.793
	SRR8316903	Complete white stage	3.499
	SRR8316902	Silver flowering stage	2.711
	SRR8316904	Silver flowering stage	3.089
	SRR8316905	Silver flowering stage	1.330
	SRR8316906	Gold flowering stage	4.301
	SRR8316907	Gold flowering stage	2.420
	SRR8316908	Gold flowering stage	3.948
SRP132670	SRR6706286	Control	3.821
	SRR6706287	Light intensity 50%	4.387
	SRR6706288	Light intensity 20%	4.339
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.932
	CNS0095593	Slightly white alabastrum(diploid) 2	2.479
	CNS0095594	Slightly white alabastrum(diploid) 3	2.965
	CNS0095595	Whole white alabastrum(diploid) 2	3.029
	CNS0095596	Whole white alabastrum(diploid) 3	1.807
	CNS0095597	Whole white alabastrum(diploid) 4	1.855
	CNS0095598	Silvery flower (diploied) 1	4.327
	CNS0095599	Silvery flower (diploied) 2	3.346
	CNS0095600	Silvery flower (diploied) 3	5.715
	CNS0095601	Golden flower (diploid) 1	4.668
	CNS0095602	Golden flower (diploid) 2	4.667
	CNS0095603	Golden flower (diploid) 3	5.188
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.776
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.951
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.128
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.907
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.270
	CNS0095610	Silvery flower (tetraploid) 1	4.661
	CNS0095611	Silvery flower (tetraploid) 2	4.028
	CNS0095612	Silvery flower (tetraploid) 3	4.811
	CNS0095613	Golden flower (tetraploid) 1	3.291
	CNS0095614	Golden flower (tetraploid) 2	3.697
	CNS0095615	Golden flower (tetraploid) 3	3.769
CRA001975	CRR073297	Stem 1	6.160
	CRR073298	Stem 2	6.133
	CRR073299	Stem 3	4.734
	CRR073300	Leaf 1	5.561
	CRR073301	Leaf 2	4.485
	CRR073302	Leaf 3	4.636
	CRR073303	Juvenile bud 1	5.070
	CRR073304	Juvenile bud 2	2.257
	CRR073305	Juvenile bud 3	5.294
	CRR073306	Third green 1	1.234
	CRR073307	Third green 2	0.835
	CRR073308	Third green 3	1.795
	CRR073309	Second white 1	2.713
	CRR073310	Second white 2	2.451
	CRR073311	Second white 3	2.687
	CRR073312	Silver flowering 1	2.713
	CRR073313	Silver flowering 2	2.161
	CRR073314	Silver flowering 3	1.386
	CRR073315	Gold flowering 1	3.891
	CRR073316	Gold flowering 2	5.555
	CRR073317	Gold flowering 3	3.452
	CRR073318	Tawny withering 1	4.595
	CRR073319	Tawny withering 2	4.680
	CRR073320	Tawny withering 3	4.259