Gene detail

Detail information of GWHGAAZE016036

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011027431.1	1.7297E-130	PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Populus euphratica]
Swissprot	tr\|Q6DBN1\|Y4845_ARATH	2E-128	BTB/POZ domain-containing protein At4g08455
trEMBL	tr\|A0A067KCY4\|A0A067KCY4_JATCU	6E-130	Uncharacterized protein {ECO:0000313\|EMBL:KDP32873.1}
TAIR10	AT4G08455.1	1E-92	BTB/POZ domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	67404823	67409374	+
GWHAAZE00000004	mRNA	67404823	67409374	+
GWHAAZE00000004	exon	67404823	67405182	+
GWHAAZE00000004	exon	67408898	67409374	+
GWHAAZE00000004	CDS	67404823	67405182	+
GWHAAZE00000004	CDS	67408898	67409374	+

Transcript Sequence
>GWHTAAZE016056 ATGCACCGTCACCGCCGGTCATTCTCCGGCGACTTTCAGTTCTACATAGATTCGGAGGGCGAAGAGAACACCACCGGCACAACGACGATGAAGTGCGTATCTTGCAGAGAAGAGTACAAGCCACTCGACTCGGGCACCTGCCGAGAGTGCTACGAGGAAGCCAGCGAGACGGAAGAAGAACTCAAACGCGAGATCGAAGACTTGAAAGCCAAAGTTTCCTTTCTTCGCTTCTGGTCGCCGCTCGATCACCACCGATCCAACTCCCTTTGCTTTTCCGACGTCGTTTTGGTGGCTTCCGAGGACGAGTCTGGTAGGCCGGTGGCCAATCCGGTTCCTGTTCCGGCTCATAAGGCTGTTTTGGCAAGCCGATCTCCGGTATTTAGGGCCATGCTCGAAAGCAAGATGGAGGAAAGTCTGAGCGGTACGATCAAGATTGGTGATGTATCATATGATGCCCTTCGAGCCTTTGTCAACTATTTATACACAGCTGAAGCATGCCTTGACGAGCAAATGGCTTGCGATCTTTTAGTTTTGGCCGAAAAATACCAAGTGAAGAATCTCAAGACGTATTGCGAGAAGTTCATGATTTCGAAGCTCAACTGGGAGAATTCCCTTTTAACCTTTGCATTTGCTCACCAGCACAACGCCAAGAGCTTGCTCGATGCCGCCCAACAATGGATAATGGATAATATGGACAAGTTGAGTAAGAGAGAGGAGTATAGGGAACTAGTGGAGAAGGATCCAAGGCTCGTGGTGGAAATATATGAATGTTATCTCTCTAAACAGGTTAATACTGCCGCGCTTGTTAAAGATTCTTCTACTACCTCAAAGTCATAG

Network for GWHGAAZE016036

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00651.32	BTB	90	198	1.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10523	SPOP	Hedgehog signaling pathway	map04340
K10523	SPOP	Hedgehog signaling pathway - fly	map04341

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.443
	SRR3591706	second leaf	12.892
	SRR3591707	mature leaf	10.732
	SRR3591708	Shoot apex	23.405
	SRR3591709	Stem	32.534
	SRR3591710	White floral bud	19.651
	SRR3591711	White flower	21.104
	SRR3591712	Green floral bud	16.114
	SRR3591713	Yellow flower	16.236
SRP173429	SRR8316895	Juvenile bud stage	25.204
	SRR8316896	Juvenile bud stage	35.306
	SRR8316897	Juvenile bud stage	19.535
	SRR8316894	Third green stage	5.994
	SRR8316900	Third green stage	19.661
	SRR8316901	Third green stage	27.112
	SRR8316898	Complete white stage	10.040
	SRR8316899	Complete white stage	39.409
	SRR8316903	Complete white stage	11.940
	SRR8316902	Silver flowering stage	7.776
	SRR8316904	Silver flowering stage	12.604
	SRR8316905	Silver flowering stage	5.784
	SRR8316906	Gold flowering stage	21.876
	SRR8316907	Gold flowering stage	17.864
	SRR8316908	Gold flowering stage	19.747
SRP132670	SRR6706286	Control	15.440
	SRR6706287	Light intensity 50%	15.937
	SRR6706288	Light intensity 20%	18.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.497
	CNS0095593	Slightly white alabastrum(diploid) 2	28.529
	CNS0095594	Slightly white alabastrum(diploid) 3	26.173
	CNS0095595	Whole white alabastrum(diploid) 2	24.083
	CNS0095596	Whole white alabastrum(diploid) 3	14.931
	CNS0095597	Whole white alabastrum(diploid) 4	16.054
	CNS0095598	Silvery flower (diploied) 1	26.280
	CNS0095599	Silvery flower (diploied) 2	36.784
	CNS0095600	Silvery flower (diploied) 3	32.772
	CNS0095601	Golden flower (diploid) 1	37.346
	CNS0095602	Golden flower (diploid) 2	36.935
	CNS0095603	Golden flower (diploid) 3	34.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.760
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.194
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.074
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.421
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.176
	CNS0095610	Silvery flower (tetraploid) 1	26.701
	CNS0095611	Silvery flower (tetraploid) 2	31.426
	CNS0095612	Silvery flower (tetraploid) 3	21.164
	CNS0095613	Golden flower (tetraploid) 1	14.463
	CNS0095614	Golden flower (tetraploid) 2	21.072
	CNS0095615	Golden flower (tetraploid) 3	15.481
CRA001975	CRR073297	Stem 1	27.861
	CRR073298	Stem 2	27.224
	CRR073299	Stem 3	36.291
	CRR073300	Leaf 1	36.592
	CRR073301	Leaf 2	37.859
	CRR073302	Leaf 3	27.038
	CRR073303	Juvenile bud 1	40.063
	CRR073304	Juvenile bud 2	33.447
	CRR073305	Juvenile bud 3	34.349
	CRR073306	Third green 1	15.754
	CRR073307	Third green 2	17.634
	CRR073308	Third green 3	14.681
	CRR073309	Second white 1	19.459
	CRR073310	Second white 2	19.293
	CRR073311	Second white 3	16.577
	CRR073312	Silver flowering 1	11.507
	CRR073313	Silver flowering 2	16.887
	CRR073314	Silver flowering 3	7.650
	CRR073315	Gold flowering 1	14.865
	CRR073316	Gold flowering 2	21.860
	CRR073317	Gold flowering 3	18.166
	CRR073318	Tawny withering 1	31.689
	CRR073319	Tawny withering 2	28.706
	CRR073320	Tawny withering 3	35.230