Gene detail

Detail information of GWHGAAZE016015

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009605412.1	8.7877E-172	PREDICTED: myb domain-containing protein YDR026C-like [Nicotiana tomentosiformis]
trEMBL	tr\|A0A068TZJ8\|A0A068TZJ8_COFCA	5E-157	Coffea canephora DH200=94 genomic scaffold, scaffold_5 {ECO:0000313\|EMBL:CDP00778.1}
TAIR10	AT5G41020.1	4E-110	myb family transcription factor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	66521752	66523524	+
GWHAAZE00000004	mRNA	66521752	66523524	+
GWHAAZE00000004	exon	66521752	66523524	+
GWHAAZE00000004	CDS	66521752	66523524	+

Transcript Sequence
>GWHTAAZE016035 ATGGGCGTGAGATTAGATGAGGAGGAGACTGTGGTCAAGGATACGGTGAAAAAGTCTAAGCACAACAAGAAGAATAAGATGAATGATTTGAAAGAAAATAGTTTTACATCGAGGGAAGGAGCTGAGCAAAGGAAGAGAAATAAGAAACGAGGGGTTAGTGGTGATATTGAACTTGATAATGCCCTTGATGAAGTTGAAAATAGAAAGGGTTGTGCAGAAGTGGATGGTGATCTTCAAAAGGAAACGGATCAGAAGAAGAAAAAGAAGAAAAGGAAATTGGAATTCGGTGAAGATGGCATTGAAGTGAGTGAAGACGTCAAGAAAAAGAAGGATAAGAAGGAACAAGATGTTTCTGGGGTTGTACAAAAGGAGAAAGATGAGAAGAAAAATAGAAAATTAGAGTTTGGTGAAGATGGAGATGCCTCGAAAGATGAGGTTCAAATGGAAGGAGAGGAGAAGAGGCACAAGAGTTCTGCGAAGGAAGATATCAGTAAACTGAAGGATGGGGAAGAAGGTTCCAAAGAGAAGAAGAAAAGCCAAGATGGAAAAGATGCTAGAAAAATGAGGGAGGAAAATGTTGGGGATAACGGTGGAGAGGTTGAAAAGAAAAGGAAAAAAAAGAGGAAAAAAGGGATTTTGGATGCCGAAATAGCGACTGAGGAATTGGGTAATCAAGTAGGTCTTGAAGAGAAAGATTTTGCTGATATTGAAGGTTCAGCTACGATAGAGGACAGTGAAGGCAAAAATGGTAAGAAAATTAAGAGGAAGAAAACCAAATCAGCTGAAAATGATGACGAAAATCCTAAAGCAAAAGGAAAAACACCAAAAAAAGTTAGTTTTTCGGGTAATGTGGAGGTCTTTCCCGCATCGGGCAAATTAAGTACCAGAAATAAAGAAAACTTGGAAGATGATGAGTTAGTGCGAGGCAAGCGATTCTCGGCCGAGGAAGATGAGACGATTCAAGAAGCGGTTCAAAACTACATAGACACACATAACTTGGGTGAAGAAGGGTTGAACAAGGTTCTCAACTGTAGTTCTCATCCTGAATTAAAAAATTGTTGGAAGGAAATAGGTGCAGCTATACCGTACAGGCCATTTAGAGCAATTTATTACCGTGCCCATATTTTGTTTGAGAGGGGGGAGACTCGTAAATGGACACAAGAAGAATATGAATTCATCAAAAAGGTTCAAGAGAAACACGGCAACAATTGGAAACTAATAGCTGATGAGCTCGGCAAGCACCGGTTTCATGTTAAGGACACGTGGCGAAGAATAAAGCTAGCGAACATGAAGAAAGGGCACTGGTCCCAGGAGGAGTACCAGACCTTATTTGATCTGGTCAACACGGACTTGCAAATGAAAGCGTCTGAGGAAAAGAAGTCAAAGCATGGAATGTTGAGAGATAATATCTGTTGGGGAGCGATTAGCGACAAGCTGTCCACGCGTACAAATCAAACCTGTTGCCGCAAATGGTACACGCAGTTGACCTCGTCAATGGTAGAGGAAGGGATATGGGCTGACGTGGATGATTATCGCTTGCTTGATGCCCTGTTTAATTTAGACGCGTGTTGTGTGGAGGATGTTGATTGGGACAGTCTTCTCGAGCGCCGGTCTGGTGAGGTGTGCCGGAAGCGGTGGGATCAGATGGTGCGCCACATAGGCCTACACGGGCTCAAGTCATTTAGCGAACAAGTCGATATTCTAGCGAAACGATATTGTCCGGCTTTGGTTGAAGCAAGAGAAGAGTGGGATAGCAAACCTAGGGTTGATTAA

Network for GWHGAAZE016015

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	385	443	8.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.839
	SRR3591706	second leaf	10.336
	SRR3591707	mature leaf	14.015
	SRR3591708	Shoot apex	18.378
	SRR3591709	Stem	12.219
	SRR3591710	White floral bud	13.947
	SRR3591711	White flower	17.092
	SRR3591712	Green floral bud	13.920
	SRR3591713	Yellow flower	12.887
SRP173429	SRR8316895	Juvenile bud stage	8.115
	SRR8316896	Juvenile bud stage	11.564
	SRR8316897	Juvenile bud stage	5.722
	SRR8316894	Third green stage	5.371
	SRR8316900	Third green stage	11.489
	SRR8316901	Third green stage	14.019
	SRR8316898	Complete white stage	2.797
	SRR8316899	Complete white stage	12.524
	SRR8316903	Complete white stage	9.702
	SRR8316902	Silver flowering stage	4.455
	SRR8316904	Silver flowering stage	5.970
	SRR8316905	Silver flowering stage	3.320
	SRR8316906	Gold flowering stage	12.053
	SRR8316907	Gold flowering stage	11.905
	SRR8316908	Gold flowering stage	10.945
SRP132670	SRR6706286	Control	19.090
	SRR6706287	Light intensity 50%	16.221
	SRR6706288	Light intensity 20%	14.544
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.723
	CNS0095593	Slightly white alabastrum(diploid) 2	23.991
	CNS0095594	Slightly white alabastrum(diploid) 3	30.803
	CNS0095595	Whole white alabastrum(diploid) 2	18.688
	CNS0095596	Whole white alabastrum(diploid) 3	13.381
	CNS0095597	Whole white alabastrum(diploid) 4	16.740
	CNS0095598	Silvery flower (diploied) 1	22.726
	CNS0095599	Silvery flower (diploied) 2	21.607
	CNS0095600	Silvery flower (diploied) 3	13.239
	CNS0095601	Golden flower (diploid) 1	25.078
	CNS0095602	Golden flower (diploid) 2	14.310
	CNS0095603	Golden flower (diploid) 3	13.268
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.512
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.195
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.639
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.745
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.260
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.247
	CNS0095610	Silvery flower (tetraploid) 1	16.534
	CNS0095611	Silvery flower (tetraploid) 2	14.276
	CNS0095612	Silvery flower (tetraploid) 3	10.997
	CNS0095613	Golden flower (tetraploid) 1	16.554
	CNS0095614	Golden flower (tetraploid) 2	16.650
	CNS0095615	Golden flower (tetraploid) 3	9.035
CRA001975	CRR073297	Stem 1	16.740
	CRR073298	Stem 2	16.900
	CRR073299	Stem 3	12.945
	CRR073300	Leaf 1	16.250
	CRR073301	Leaf 2	17.365
	CRR073302	Leaf 3	7.542
	CRR073303	Juvenile bud 1	10.923
	CRR073304	Juvenile bud 2	6.511
	CRR073305	Juvenile bud 3	10.040
	CRR073306	Third green 1	4.667
	CRR073307	Third green 2	3.594
	CRR073308	Third green 3	4.696
	CRR073309	Second white 1	2.628
	CRR073310	Second white 2	4.016
	CRR073311	Second white 3	2.970
	CRR073312	Silver flowering 1	2.251
	CRR073313	Silver flowering 2	2.612
	CRR073314	Silver flowering 3	2.859
	CRR073315	Gold flowering 1	5.828
	CRR073316	Gold flowering 2	7.971
	CRR073317	Gold flowering 3	1.093
	CRR073318	Tawny withering 1	12.248
	CRR073319	Tawny withering 2	11.943
	CRR073320	Tawny withering 3	10.078