Detail information of GWHGAAZE016014


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010645962.19.0761E-173PREDICTED: peroxisome biogenesis protein 1 isoform X3 [Vitis vinifera]
Swissprottr|Q9FNP1|PEX1_ARATH8E-112Peroxisome biogenesis protein 1
trEMBLtr|F6H2Q4|F6H2Q4_VITVI7E-172Putative uncharacterized protein {ECO:0000313|EMBL:CCB46496.1}
TAIR10AT5G08470.17E-94peroxisome 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6646113566471469-
GWHAAZE00000004mRNA6646113566471469-
GWHAAZE00000004exon6647115366471469-
GWHAAZE00000004exon6646996566470013-
GWHAAZE00000004exon6646946766469639-
GWHAAZE00000004exon6646729566467394-
GWHAAZE00000004exon6646628066466552-
GWHAAZE00000004exon6646362866464384-
GWHAAZE00000004exon6646350166463544-
GWHAAZE00000004exon6646220566462296-
GWHAAZE00000004exon6646134966461451-
GWHAAZE00000004exon6646113566461274-
GWHAAZE00000004five_prime_UTR6647135466471469-
GWHAAZE00000004CDS6647115366471353-
GWHAAZE00000004CDS6646996566470013-
GWHAAZE00000004CDS6646946766469639-
GWHAAZE00000004CDS6646729566467394-
GWHAAZE00000004CDS6646628066466552-
GWHAAZE00000004CDS6646362866464384-
GWHAAZE00000004CDS6646350166463544-
GWHAAZE00000004CDS6646220566462296-
GWHAAZE00000004CDS6646134966461451-
GWHAAZE00000004CDS6646113566461274-
Transcript Sequence

Network for GWHGAAZE016014

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09262.12PEX-1N1131726.50E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13338PEX1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0007031biological_processperoxisome organization
GO:0005777cellular_componentperoxisome
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.641
SRR3591706second leaf3.024
SRR3591707mature leaf3.658
SRR3591708Shoot apex3.225
SRR3591709Stem3.424
SRR3591710White floral bud3.072
SRR3591711White flower3.806
SRR3591712Green floral bud2.678
SRR3591713Yellow flower3.448
SRP173429 SRR8316895Juvenile bud stage 0.969
SRR8316896Juvenile bud stage 1.531
SRR8316897Juvenile bud stage 0.959
SRR8316894Third green stage 0.644
SRR8316900Third green stage 1.654
SRR8316901Third green stage 1.641
SRR8316898Complete white stage 0.902
SRR8316899Complete white stage 2.228
SRR8316903Complete white stage 1.453
SRR8316902Silver flowering stage0.618
SRR8316904Silver flowering stage1.402
SRR8316905Silver flowering stage0.547
SRR8316906Gold flowering stage 2.134
SRR8316907Gold flowering stage 1.256
SRR8316908Gold flowering stage 2.009
SRP132670SRR6706286Control1.205
SRR6706287Light intensity 50%1.296
SRR6706288Light intensity 20%1.437
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.735
CNS0095593Slightly white alabastrum(diploid) 20.426
CNS0095594Slightly white alabastrum(diploid) 30.820
CNS0095595Whole white alabastrum(diploid) 20.396
CNS0095596Whole white alabastrum(diploid) 30.441
CNS0095597Whole white alabastrum(diploid) 40.368
CNS0095598Silvery flower (diploied) 11.502
CNS0095599Silvery flower (diploied) 22.019
CNS0095600Silvery flower (diploied) 32.405
CNS0095601Golden flower (diploid) 11.196
CNS0095602Golden flower (diploid) 22.066
CNS0095603Golden flower (diploid) 32.086
CNS0095604Slightly white alabastrum(tetraploid) 10.556
CNS0095605Slightly white alabastrum(tetraploid) 20.711
CNS0095606Slightly white alabastrum(tetraploid) 32.045
CNS0095607Whole white alabastrum(tetraploid) 10.510
CNS0095608Whole white alabastrum(tetraploid) 20.381
CNS0095609Whole white alabastrum(tetraploid) 31.451
CNS0095610Silvery flower (tetraploid) 11.686
CNS0095611Silvery flower (tetraploid) 22.821
CNS0095612Silvery flower (tetraploid) 31.592
CNS0095613Golden flower (tetraploid) 10.843
CNS0095614Golden flower (tetraploid) 21.703
CNS0095615Golden flower (tetraploid) 31.209
CRA001975CRR073297Stem 11.238
CRR073298Stem 21.086
CRR073299Stem 31.011
CRR073300Leaf 11.039
CRR073301Leaf 21.154
CRR073302Leaf 30.961
CRR073303Juvenile bud 10.773
CRR073304Juvenile bud 20.564
CRR073305Juvenile bud 30.933
CRR073306Third green 10.243
CRR073307Third green 20.484
CRR073308Third green 30.239
CRR073309Second white 10.279
CRR073310Second white 20.451
CRR073311Second white 30.786
CRR073312Silver flowering 10.253
CRR073313Silver flowering 20.133
CRR073314Silver flowering 30.507
CRR073315Gold flowering 10.817
CRR073316Gold flowering 21.698
CRR073317Gold flowering 31.045
CRR073318Tawny withering 10.826
CRR073319Tawny withering 20.239
CRR073320Tawny withering 31.059