Detail information of GWHGAAZE016012


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002517570.10peroxisome biogenesis factor, putative [Ricinus communis]
Swissprottr|Q9FNP1|PEX1_ARATH1E-164Peroxisome biogenesis protein 1
trEMBLtr|B9RV01|B9RV01_RICCO0Peroxisome biogenesis factor, putative {ECO:0000313|EMBL:EEF44734.1}
TAIR10AT5G08470.18E-126peroxisome 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6643991166450720-
GWHAAZE00000004mRNA6643991166450720-
GWHAAZE00000004exon6645049966450720-
GWHAAZE00000004exon6644998866450081-
GWHAAZE00000004exon6644971066449864-
GWHAAZE00000004exon6644324466443310-
GWHAAZE00000004exon6644308166443154-
GWHAAZE00000004exon6644194066442065-
GWHAAZE00000004exon6644176066441821-
GWHAAZE00000004exon6644138166441498-
GWHAAZE00000004exon6643991166440159-
GWHAAZE00000004CDS6645049966450720-
GWHAAZE00000004CDS6644998866450081-
GWHAAZE00000004CDS6644971066449864-
GWHAAZE00000004CDS6644324466443310-
GWHAAZE00000004CDS6644308166443154-
GWHAAZE00000004CDS6644194066442065-
GWHAAZE00000004CDS6644176066441821-
GWHAAZE00000004CDS6644138166441498-
GWHAAZE00000004CDS6643991166440159-
Transcript Sequence

Network for GWHGAAZE016012

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.30AAA191152.40E-06
PF00004.30AAA1982872.50E-21
PF17862.2AAA_lid_33123487.20E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13338PEX1 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.552
SRR3591706second leaf6.146
SRR3591707mature leaf6.049
SRR3591708Shoot apex7.442
SRR3591709Stem6.905
SRR3591710White floral bud7.190
SRR3591711White flower8.422
SRR3591712Green floral bud6.131
SRR3591713Yellow flower6.610
SRP173429 SRR8316895Juvenile bud stage 1.167
SRR8316896Juvenile bud stage 3.287
SRR8316897Juvenile bud stage 1.538
SRR8316894Third green stage 1.393
SRR8316900Third green stage 3.271
SRR8316901Third green stage 3.050
SRR8316898Complete white stage 0.679
SRR8316899Complete white stage 4.314
SRR8316903Complete white stage 1.031
SRR8316902Silver flowering stage0.705
SRR8316904Silver flowering stage2.167
SRR8316905Silver flowering stage0.749
SRR8316906Gold flowering stage 1.859
SRR8316907Gold flowering stage 2.140
SRR8316908Gold flowering stage 2.466
SRP132670SRR6706286Control2.059
SRR6706287Light intensity 50%2.356
SRR6706288Light intensity 20%2.551
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.189
CNS0095593Slightly white alabastrum(diploid) 21.934
CNS0095594Slightly white alabastrum(diploid) 32.167
CNS0095595Whole white alabastrum(diploid) 22.219
CNS0095596Whole white alabastrum(diploid) 31.712
CNS0095597Whole white alabastrum(diploid) 41.784
CNS0095598Silvery flower (diploied) 14.683
CNS0095599Silvery flower (diploied) 22.111
CNS0095600Silvery flower (diploied) 33.004
CNS0095601Golden flower (diploid) 12.575
CNS0095602Golden flower (diploid) 23.314
CNS0095603Golden flower (diploid) 33.238
CNS0095604Slightly white alabastrum(tetraploid) 12.371
CNS0095605Slightly white alabastrum(tetraploid) 21.893
CNS0095606Slightly white alabastrum(tetraploid) 34.731
CNS0095607Whole white alabastrum(tetraploid) 12.556
CNS0095608Whole white alabastrum(tetraploid) 21.347
CNS0095609Whole white alabastrum(tetraploid) 32.753
CNS0095610Silvery flower (tetraploid) 12.946
CNS0095611Silvery flower (tetraploid) 23.544
CNS0095612Silvery flower (tetraploid) 34.358
CNS0095613Golden flower (tetraploid) 13.189
CNS0095614Golden flower (tetraploid) 22.077
CNS0095615Golden flower (tetraploid) 32.630
CRA001975CRR073297Stem 14.646
CRR073298Stem 21.627
CRR073299Stem 32.258
CRR073300Leaf 12.223
CRR073301Leaf 23.234
CRR073302Leaf 31.804
CRR073303Juvenile bud 12.774
CRR073304Juvenile bud 21.279
CRR073305Juvenile bud 34.025
CRR073306Third green 10.495
CRR073307Third green 20.248
CRR073308Third green 30.847
CRR073309Second white 10.919
CRR073310Second white 21.900
CRR073311Second white 31.247
CRR073312Silver flowering 11.598
CRR073313Silver flowering 21.119
CRR073314Silver flowering 31.614
CRR073315Gold flowering 11.424
CRR073316Gold flowering 25.698
CRR073317Gold flowering 31.532
CRR073318Tawny withering 13.264
CRR073319Tawny withering 23.212
CRR073320Tawny withering 32.132