Detail information of GWHGAAZE015948


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007019141.12.901E-133SWITCH/sucrose nonfermenting 3C [Theobroma cacao]
Swissprottr|Q9XI07|SWI3C_ARATH4E-110SWI/SNF complex subunit SWI3C
trEMBLtr|A0A061FH16|A0A061FH16_THECC1E-133SWITCH/sucrose nonfermenting 3C {ECO:0000313|EMBL:EOY16366.1}
TAIR10AT1G21700.17E-91SWITCH/sucrose nonfermenting 3C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6416529964171334-
GWHAAZE00000004mRNA6416529964171334-
GWHAAZE00000004exon6417091264171334-
GWHAAZE00000004exon6416548564165845-
GWHAAZE00000004exon6416529964165399-
GWHAAZE00000004CDS6417091264171334-
GWHAAZE00000004CDS6416548564165845-
GWHAAZE00000004CDS6416529964165399-
Transcript Sequence

Network for GWHGAAZE015948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04433.18SWIRM1517.90E-11
PF00249.32Myb_DNA-binding1812232.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11649SMARCC Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE015948.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 301234567891011121314Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.347
SRR3591706second leaf8.998
SRR3591707mature leaf12.403
SRR3591708Shoot apex7.961
SRR3591709Stem12.419
SRR3591710White floral bud5.872
SRR3591711White flower6.316
SRR3591712Green floral bud6.979
SRR3591713Yellow flower6.572
SRP173429 SRR8316895Juvenile bud stage 4.624
SRR8316896Juvenile bud stage 5.140
SRR8316897Juvenile bud stage 2.504
SRR8316894Third green stage 1.250
SRR8316900Third green stage 6.817
SRR8316901Third green stage 5.547
SRR8316898Complete white stage 2.887
SRR8316899Complete white stage 9.529
SRR8316903Complete white stage 3.921
SRR8316902Silver flowering stage1.359
SRR8316904Silver flowering stage2.680
SRR8316905Silver flowering stage1.535
SRR8316906Gold flowering stage 4.973
SRR8316907Gold flowering stage 3.728
SRR8316908Gold flowering stage 5.852
SRP132670SRR6706286Control1.869
SRR6706287Light intensity 50%2.325
SRR6706288Light intensity 20%2.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.243
CNS0095593Slightly white alabastrum(diploid) 22.848
CNS0095594Slightly white alabastrum(diploid) 32.773
CNS0095595Whole white alabastrum(diploid) 22.368
CNS0095596Whole white alabastrum(diploid) 32.904
CNS0095597Whole white alabastrum(diploid) 43.456
CNS0095598Silvery flower (diploied) 14.765
CNS0095599Silvery flower (diploied) 24.904
CNS0095600Silvery flower (diploied) 35.501
CNS0095601Golden flower (diploid) 14.155
CNS0095602Golden flower (diploid) 25.402
CNS0095603Golden flower (diploid) 35.129
CNS0095604Slightly white alabastrum(tetraploid) 15.554
CNS0095605Slightly white alabastrum(tetraploid) 25.688
CNS0095606Slightly white alabastrum(tetraploid) 310.047
CNS0095607Whole white alabastrum(tetraploid) 14.419
CNS0095608Whole white alabastrum(tetraploid) 22.097
CNS0095609Whole white alabastrum(tetraploid) 37.629
CNS0095610Silvery flower (tetraploid) 16.554
CNS0095611Silvery flower (tetraploid) 26.630
CNS0095612Silvery flower (tetraploid) 35.150
CNS0095613Golden flower (tetraploid) 13.569
CNS0095614Golden flower (tetraploid) 26.563
CNS0095615Golden flower (tetraploid) 35.312
CRA001975CRR073297Stem 16.136
CRR073298Stem 25.739
CRR073299Stem 33.285
CRR073300Leaf 15.278
CRR073301Leaf 24.055
CRR073302Leaf 34.074
CRR073303Juvenile bud 13.265
CRR073304Juvenile bud 24.202
CRR073305Juvenile bud 35.133
CRR073306Third green 11.384
CRR073307Third green 20.725
CRR073308Third green 31.507
CRR073309Second white 11.142
CRR073310Second white 20.978
CRR073311Second white 31.883
CRR073312Silver flowering 10.994
CRR073313Silver flowering 21.113
CRR073314Silver flowering 31.624
CRR073315Gold flowering 12.752
CRR073316Gold flowering 25.219
CRR073317Gold flowering 33.160
CRR073318Tawny withering 12.495
CRR073319Tawny withering 25.586
CRR073320Tawny withering 35.574