Gene detail

Detail information of GWHGAAZE015929

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011069394.1	2.69917E-94	PREDICTED: proteasome subunit beta type-3-A [Sesamum indicum]
Swissprot	tr\|Q9LST7\|PSB3_ORYSJ	8E-91	Proteasome subunit beta type-3
trEMBL	tr\|A0A068UQW6\|A0A068UQW6_COFCA	2E-94	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}
TAIR10	AT1G77440.2	9E-74	20S proteasome beta subunit C2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	63442140	63451760	-
GWHAAZE00000004	mRNA	63442140	63451760	-
GWHAAZE00000004	exon	63442140	63442188	-
GWHAAZE00000004	exon	63443222	63443316	-
GWHAAZE00000004	exon	63444589	63444774	-
GWHAAZE00000004	exon	63445521	63445605	-
GWHAAZE00000004	exon	63447857	63448062	-
GWHAAZE00000004	exon	63449366	63449429	-
GWHAAZE00000004	exon	63450815	63450922	-
GWHAAZE00000004	exon	63451409	63451623	-
GWHAAZE00000004	exon	63451755	63451760	-
GWHAAZE00000004	CDS	63451755	63451760	-
GWHAAZE00000004	CDS	63451409	63451623	-
GWHAAZE00000004	CDS	63450815	63450922	-
GWHAAZE00000004	CDS	63449366	63449429	-
GWHAAZE00000004	CDS	63447857	63448062	-
GWHAAZE00000004	CDS	63445521	63445605	-
GWHAAZE00000004	CDS	63444589	63444774	-
GWHAAZE00000004	CDS	63443222	63443316	-
GWHAAZE00000004	CDS	63442140	63442188	-

Transcript Sequence
>GWHTAAZE015945 ATGTCGTGCAATTTATTAAATTTGATTGCTTTACTACAGATCTTCGAGTACAATGGAAGTGCCCTAGTAGCGATGGTAGGGAAGAACTGCTTCGCCATCGCCAGTGACCGCCGCCTAGGCGTACAGCTTCAGACAATCGCCACCGATTTCCAGAGAATTTATAATATTCACGAGAAGCTCTTCATTGGCCTCTCCGGTCTTGCCACGGATGCTCAAACACTGTATCAAAGGCTTGTGTTCCGACACAAGCTGTATCAGCTTCGAGAAGAGAGGGATATGAAGCCTGAAACTTTCGCTAGCCTTGTCTCTGCCATTCTTTATGAGAAAAGGTCCTTCACTCCCTGTCCCACACTTCCACCCAGAAACAAGTGTAGTCCACAGTCCTACCAAAGGGAAACTCTCTGTCTACATGATCACTACATTTATATCTATTACATGACAAGCATATTATCATATTCATGTATGTATTACATGACAAGCATATTATCATACTCATGGTTTATGTGTAGGTTCGGTCCATATTTTTGCCAGCCGGTGATTGCTGGTTTGGGAGATGAAGATAAACCTTTCATTTGTACAATGGATTCCATTGGGGCAAAGGAACTAGCAAAAGATTTTGTTGTTGCTGGCACTTCCTCAGAATCACTGTATGGTGCCTGTGAGGCAATGTTCAAGCCTGACATGGGCATTGGCTCCCCCTGCTACGACACTGTATGGACCATATATGGTCATATGCAAATAGAAACCATCCCACCCTCCCTTTCAAGCCATCTAATCCATGATGGCCCGAGATATAGCACTCAATGGGCTAGAGTGGCCCCTATTTCACCTTGTCAACCCCGGGCAACTCCGAGTATTCCTGCCCCAAAGGAGCCTGAAGAACTGTTTGAGACTATCTCTCAAGCATTGTTATCATCTGTAGACCGCGACTGCCTTGCTGGTTGGGGAGGACACGTCTATGTTGTAACACCAAGTGAAGTAACAGAGAGGATATTGAAAGGGAGGATGGATTGA

Network for GWHGAAZE015929

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00227.27	Proteasome	18	109	3.30E-16
PF00227.27	Proteasome	163	229	4.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02735	PSMB3	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0051603	biological_process	proteolysis involved in cellular protein catabolic process
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005839	cellular_component	proteasome core complex
GO:0019774	cellular_component	proteasome core complex, beta-subunit complex
GO:0004298	molecular_function	threonine-type endopeptidase activity
GO:0004175	molecular_function	endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.860
	SRR3591706	second leaf	40.645
	SRR3591707	mature leaf	32.903
	SRR3591708	Shoot apex	73.619
	SRR3591709	Stem	63.730
	SRR3591710	White floral bud	65.539
	SRR3591711	White flower	146.446
	SRR3591712	Green floral bud	82.846
	SRR3591713	Yellow flower	132.739
SRP173429	SRR8316895	Juvenile bud stage	41.906
	SRR8316896	Juvenile bud stage	66.140
	SRR8316897	Juvenile bud stage	30.484
	SRR8316894	Third green stage	26.645
	SRR8316900	Third green stage	83.157
	SRR8316901	Third green stage	81.429
	SRR8316898	Complete white stage	32.372
	SRR8316899	Complete white stage	84.456
	SRR8316903	Complete white stage	48.344
	SRR8316902	Silver flowering stage	41.185
	SRR8316904	Silver flowering stage	48.769
	SRR8316905	Silver flowering stage	23.653
	SRR8316906	Gold flowering stage	131.347
	SRR8316907	Gold flowering stage	120.992
	SRR8316908	Gold flowering stage	111.485
SRP132670	SRR6706286	Control	106.812
	SRR6706287	Light intensity 50%	110.801
	SRR6706288	Light intensity 20%	124.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.425
	CNS0095593	Slightly white alabastrum(diploid) 2	66.385
	CNS0095594	Slightly white alabastrum(diploid) 3	55.403
	CNS0095595	Whole white alabastrum(diploid) 2	55.667
	CNS0095596	Whole white alabastrum(diploid) 3	56.815
	CNS0095597	Whole white alabastrum(diploid) 4	50.662
	CNS0095598	Silvery flower (diploied) 1	47.656
	CNS0095599	Silvery flower (diploied) 2	62.700
	CNS0095600	Silvery flower (diploied) 3	83.288
	CNS0095601	Golden flower (diploid) 1	49.027
	CNS0095602	Golden flower (diploid) 2	73.672
	CNS0095603	Golden flower (diploid) 3	72.733
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.583
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.774
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.096
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.226
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.557
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.697
	CNS0095610	Silvery flower (tetraploid) 1	78.405
	CNS0095611	Silvery flower (tetraploid) 2	79.700
	CNS0095612	Silvery flower (tetraploid) 3	50.638
	CNS0095613	Golden flower (tetraploid) 1	74.139
	CNS0095614	Golden flower (tetraploid) 2	69.724
	CNS0095615	Golden flower (tetraploid) 3	105.524
CRA001975	CRR073297	Stem 1	59.695
	CRR073298	Stem 2	54.530
	CRR073299	Stem 3	91.123
	CRR073300	Leaf 1	69.164
	CRR073301	Leaf 2	78.757
	CRR073302	Leaf 3	116.430
	CRR073303	Juvenile bud 1	114.828
	CRR073304	Juvenile bud 2	107.988
	CRR073305	Juvenile bud 3	80.480
	CRR073306	Third green 1	56.813
	CRR073307	Third green 2	54.791
	CRR073308	Third green 3	54.896
	CRR073309	Second white 1	90.104
	CRR073310	Second white 2	78.186
	CRR073311	Second white 3	58.223
	CRR073312	Silver flowering 1	47.762
	CRR073313	Silver flowering 2	67.620
	CRR073314	Silver flowering 3	43.285
	CRR073315	Gold flowering 1	67.517
	CRR073316	Gold flowering 2	67.252
	CRR073317	Gold flowering 3	66.618
	CRR073318	Tawny withering 1	70.532
	CRR073319	Tawny withering 2	72.066
	CRR073320	Tawny withering 3	71.517