Detail information of GWHGAAZE015866


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074771.10PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Sesamum indicum]
Swissprottr|Q42601|CARB_ARATH2E-176Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBLtr|A0A068VDE1|A0A068VDE1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_297 {ECO:0000313|EMBL:CDP18860.1}
TAIR10AT1G29900.14E-129carbamoyl phosphate synthetase B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene6078463160786163+
GWHAAZE00000004mRNA6078463160786163+
GWHAAZE00000004exon6078463160784711+
GWHAAZE00000004exon6078480260785243+
GWHAAZE00000004exon6078538060785496+
GWHAAZE00000004exon6078560160786163+
GWHAAZE00000004CDS6078463160784711+
GWHAAZE00000004CDS6078480260785243+
GWHAAZE00000004CDS6078538060785496+
GWHAAZE00000004CDS6078560160786163+
Transcript Sequence

Network for GWHGAAZE015866

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02786.18CPSase_L_D2581691.70E-19
PF02142.23MGS2633492.40E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01955carB, CPA2 Metabolic pathways map01100
Pyrimidine metabolismmap00240
Alanine, aspartate and glutamate metabolismmap00250

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.920
SRR3591706second leaf1.503
SRR3591707mature leaf1.039
SRR3591708Shoot apex3.458
SRR3591709Stem1.692
SRR3591710White floral bud1.871
SRR3591711White flower3.039
SRR3591712Green floral bud4.653
SRR3591713Yellow flower1.416
SRP173429 SRR8316895Juvenile bud stage 0.701
SRR8316896Juvenile bud stage 1.004
SRR8316897Juvenile bud stage 0.574
SRR8316894Third green stage 0.619
SRR8316900Third green stage 1.462
SRR8316901Third green stage 1.047
SRR8316898Complete white stage 0.075
SRR8316899Complete white stage 0.984
SRR8316903Complete white stage 0.343
SRR8316902Silver flowering stage0.239
SRR8316904Silver flowering stage0.352
SRR8316905Silver flowering stage0.106
SRR8316906Gold flowering stage 0.205
SRR8316907Gold flowering stage 0.248
SRR8316908Gold flowering stage 0.404
SRP132670SRR6706286Control0.916
SRR6706287Light intensity 50%0.899
SRR6706288Light intensity 20%0.987
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.208
CNS0095593Slightly white alabastrum(diploid) 20.534
CNS0095594Slightly white alabastrum(diploid) 30.181
CNS0095595Whole white alabastrum(diploid) 20.683
CNS0095596Whole white alabastrum(diploid) 31.066
CNS0095597Whole white alabastrum(diploid) 40.316
CNS0095598Silvery flower (diploied) 10.610
CNS0095599Silvery flower (diploied) 20.152
CNS0095600Silvery flower (diploied) 30.623
CNS0095601Golden flower (diploid) 10.500
CNS0095602Golden flower (diploid) 20.504
CNS0095603Golden flower (diploid) 30.547
CNS0095604Slightly white alabastrum(tetraploid) 10.419
CNS0095605Slightly white alabastrum(tetraploid) 20.379
CNS0095606Slightly white alabastrum(tetraploid) 31.119
CNS0095607Whole white alabastrum(tetraploid) 11.111
CNS0095608Whole white alabastrum(tetraploid) 20.451
CNS0095609Whole white alabastrum(tetraploid) 31.243
CNS0095610Silvery flower (tetraploid) 10.634
CNS0095611Silvery flower (tetraploid) 20.745
CNS0095612Silvery flower (tetraploid) 30.263
CNS0095613Golden flower (tetraploid) 10.147
CNS0095614Golden flower (tetraploid) 20.351
CNS0095615Golden flower (tetraploid) 30.322
CRA001975CRR073297Stem 11.045
CRR073298Stem 21.150
CRR073299Stem 30.923
CRR073300Leaf 11.384
CRR073301Leaf 21.294
CRR073302Leaf 31.015
CRR073303Juvenile bud 10.857
CRR073304Juvenile bud 20.799
CRR073305Juvenile bud 31.211
CRR073306Third green 10.064
CRR073307Third green 20.065
CRR073308Third green 30.259
CRR073309Second white 10.170
CRR073310Second white 20.189
CRR073311Second white 30.216
CRR073312Silver flowering 10.448
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.312
CRR073315Gold flowering 10.551
CRR073316Gold flowering 20.914
CRR073317Gold flowering 30.495
CRR073318Tawny withering 10.761
CRR073319Tawny withering 20.787
CRR073320Tawny withering 30.565