Gene detail

Detail information of GWHGAAZE015851

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	2E-126	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT4G20140.1	9E-107	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	60409633	60424703	-
GWHAAZE00000004	mRNA	60409633	60424703	-
GWHAAZE00000004	exon	60424310	60424703	-
GWHAAZE00000004	exon	60421105	60421470	-
GWHAAZE00000004	exon	60417039	60417401	-
GWHAAZE00000004	exon	60411504	60412796	-
GWHAAZE00000004	exon	60410814	60410873	-
GWHAAZE00000004	exon	60409633	60409997	-
GWHAAZE00000004	CDS	60424310	60424703	-
GWHAAZE00000004	CDS	60421105	60421470	-
GWHAAZE00000004	CDS	60417039	60417401	-
GWHAAZE00000004	CDS	60411504	60412796	-
GWHAAZE00000004	CDS	60410814	60410873	-
GWHAAZE00000004	CDS	60409633	60409997	-

Transcript Sequence
>GWHTAAZE015867 ATGACGAGAAATTCTTTCATTTTCGCGGTTTCATTGTTATTGTTGCTAAATGGTTTCACTTTTTGCCTGTATGCTAAGGATAAATTTGTACTTCTGGCAATCAAAACCAATATCATTGACCATTCAGGCATTTTATCAAACAATTGGTCTGCAACTTCCAACACCTCAATCTGCACTTGGATTGGTGTCTCCTGTAATTTAAACAACCAATCTGTCACTGCCTTGAATCTCTCCGGCATGGGTCTCACCGGCACTGTCACTTCGGTCATCGGAAACCTCTCGTCCCTCACTTCACTTGACATCAGTTACAATAACTTCTATGGTTCTGTGCCTGAAGAGCTATCTCATTTGCATCATCTTCAATACTTGCTTTTATTCAACAACAGCTTCACAGGTGCAATCCCAGCTTCGTTGGGCAACATTACAAAGCTTGAGACATTGAATTTAAGGTCCAATCAGCTTACAGGTTCTGTACCGGCTGCAATATTCAACATATCTTCATTGAGAGGAATTGATCTCACAGATAATAACTTATATGGTAGTCTTCCGGCTGATATCTGTAGTCATTATTTTCCTAAACTCGAAAGAATTTTTCTGTCCTTGAATCGTTTCGAGGGGAAATTTCCTTTGAGTTTATTCAAATGTCGGGAGCTTCAGTATCTGTCATTGTCATTCAATGAATTTAGTGGCAGCATACCCATTGAAATTGGCAACTTGACTATGCTCAAGAACATATATCTTGGCAATAACAATTTGGAAGGTGAAATTCCAGTGGAGATTGGTAATCTCAAACTTTTGGAGAAATTGAATATACAAAGTAGCTCTCTAACAGGACATATTCCTAATGTTATCTTTAACATGTCCTCTTTGATGGAGATCAATTTGGTGGAAAATAACCTGACTGGAACCCTCCCAATGGACATTCATTTTGACCTTCCTGTTCTTGAAGAGCTTTATCTTAATAAAAATCAGCTTAAGGGTCAGATTCCATCATGCTTATGGGATTGCAAAGGACTTCGAATCATATCATTGTTTGAAAATAAATTCACAGGGAGCATATCTAAGAAAGTCGGAAACCTTACATTACTCAAAACTCTCTCTCTTTCTGATAACATGTTCACAGGAACATTACCAAGCGAGATTGGTAAGCTTAATTTGGAAAGACTCGTTCTTACTCAAAACAACATAACTGGCCTTATACCTTTCGAAATCTTCAATATCTCAACAATCATGCAGATCTCTTTGTCATCGAATCACTTCTCGGGCCATCTTCCATCGAGCATGGGGCTCTGGACTCCCAATCTTGAAGGCCTTTACCTAGGTGACAATAGGCTCAGTGGAACAATCCCAAGCTCTATCTCAAATGCATCTAAGCTTACCTCCATAGCAATGACTAGCAACTCATTTACTGGCTTCATACCCAACACGCTTGGTAATTTAAGAGATTTGCGACGGCTCCTTGTTGGAGAAAACAATTTGACCGGGGAAGTTTCCACTTCAGAATTAAGATTCTTTGATTCTTTGAGTAATTGCAAGAATTTGTACCTTTTGTCGATATCGCTAAATCAATTGAATGGAATCCTCCCAGCTTCAGTTGCAAATCTTTCCACTTCTCTTCGTAGTTTTGAAGCATTTGGAAGCAAAATTAAGGGCGAAATTCCAATGGGAATAGGCAACTTGAGTGGCTTATCAGCCCTAAGTTTAGATAGCAACGAGTTGACTGGGTTCATCCCATCATCACTGGGAAGAATGAAAAATCTTGAACAATTGTATCTTGAACACAACAATTTGAAAGGATCCATACCAAATGATCTTTGTTGCTCAGAAAGGTTGGGAGACTTATATTTGAGTGATAATAAACTCGACGGACCTATACCGTCATGTTTAGGAGAACTTAGTTCTATGACAAGGCTGTTCTTAGATTCTAATAATTTGACTTCGACAATACCATCAACCTTGTGGAGCCTAGAAGATCTCTTGTACTTAAACTTCTCCACAAATTCTCTTACTGGTAGTTTACCGTCATATATTCGAAATATGAAGGTGATAACAGAAATGGACTTATCATTGAATCAGTTTTCGGGTCGTATCCCAAGTACCATTGGGAGTAGCCAAATGCTAACTTTTCTATCATTTGCGCATAATGAACTACAAGGATCCATTCCTCAATCATTTGGTAACTTGGTAAACTTAGAATTGTTGGATCTATCAAATAACAATTTGTCTGGAACGATACCCAAATCCCTTGAGGCGCTTAGGTATCTCCAATACTTTAATGTGTCTTTCAATAGATTAGAAGGAGAAATCCCCATCGGAGGACATTTTGCTAACTTTACTGCACAGTCTTTTATGCAAAATGATGGATTATGTGGGGTACCTCGATTACAAGTCCAGCCATGCAAAATATCGCGGTCTAGTGAAGATGAGTTCATGGCACAAACTAAGACCTTGGCAACAATTGGGTATATGGCACCAGAATACATAAGACAAGGACTAGTATCCACGAAAGCTGATGTCTATAGCTACGGTATTCTATTAATGGAAACATTTACAAGGAAGAAGCCAACAGATGAAATATTTTCCGACAATTTGACTATGAGGAATTGGGTTTATGAAGCCTCACTCGGTTCAATAGTTCAAGTTGTAGACGCCAATTTGATAGGAAAAGAAGACGAAGATTTCTTGGCAAAAAAGGAATGTGCCTCGTCCATTTTGCATCTGGCCTTGGATTGTTCGGAAAATATTCCTACACAGAGAATGAGTATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACATTTCAAACGAACACAGGAATAGGTCTCATGACAAAG

Network for GWHGAAZE015851

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	8.50E-07
PF13855.7	LRR_8	71	129	3.80E-07
PF13855.7	LRR_8	289	348	1.90E-06
PF13855.7	LRR_8	433	493	1.20E-06
PF13855.7	LRR_8	562	621	3.20E-09
PF13855.7	LRR_8	708	765	1.40E-07
PF07714.18	PK_Tyr_Ser-Thr	806	928	3.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.089
	SRR3591706	second leaf	0.246
	SRR3591707	mature leaf	0.614
	SRR3591708	Shoot apex	0.121
	SRR3591709	Stem	0.179
	SRR3591710	White floral bud	0.093
	SRR3591711	White flower	0.265
	SRR3591712	Green floral bud	0.672
	SRR3591713	Yellow flower	0.120
SRP173429	SRR8316895	Juvenile bud stage	0.100
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.022
	SRR8316894	Third green stage	0.024
	SRR8316900	Third green stage	0.291
	SRR8316901	Third green stage	0.323
	SRR8316898	Complete white stage	0.075
	SRR8316899	Complete white stage	0.128
	SRR8316903	Complete white stage	0.197
	SRR8316902	Silver flowering stage	0.026
	SRR8316904	Silver flowering stage	0.110
	SRR8316905	Silver flowering stage	0.037
	SRR8316906	Gold flowering stage	0.250
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.046
SRP132670	SRR6706286	Control	0.243
	SRR6706287	Light intensity 50%	0.223
	SRR6706288	Light intensity 20%	0.195
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.205
	CNS0095593	Slightly white alabastrum(diploid) 2	0.407
	CNS0095594	Slightly white alabastrum(diploid) 3	0.238
	CNS0095595	Whole white alabastrum(diploid) 2	0.428
	CNS0095596	Whole white alabastrum(diploid) 3	0.363
	CNS0095597	Whole white alabastrum(diploid) 4	1.481
	CNS0095598	Silvery flower (diploied) 1	0.082
	CNS0095599	Silvery flower (diploied) 2	0.098
	CNS0095600	Silvery flower (diploied) 3	0.043
	CNS0095601	Golden flower (diploid) 1	0.079
	CNS0095602	Golden flower (diploid) 2	0.054
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.330
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.322
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.317
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.277
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.106
	CNS0095612	Silvery flower (tetraploid) 3	0.050
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	0.041
	CNS0095615	Golden flower (tetraploid) 3	0.038
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.046
	CRR073300	Leaf 1	0.441
	CRR073301	Leaf 2	0.265
	CRR073302	Leaf 3	0.017
	CRR073303	Juvenile bud 1	0.027
	CRR073304	Juvenile bud 2	0.136
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.496
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	0.354
	CRR073309	Second white 1	0.048
	CRR073310	Second white 2	0.148
	CRR073311	Second white 3	0.065
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.021
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.055
	CRR073317	Gold flowering 3	0.015
	CRR073318	Tawny withering 1	1.429
	CRR073319	Tawny withering 2	0.692
	CRR073320	Tawny withering 3	0.091