Gene detail

Detail information of GWHGAAZE015845

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354973.1	3.8807E-115	PREDICTED: receptor-like protein kinase FERONIA-like [Solanum tuberosum]
Swissprot	tr\|Q9SR05\|ANX1_ARATH	8E-105	Receptor-like protein kinase ANXUR1 (Precursor)
trEMBL	tr\|M1DMR8\|M1DMR8_SOLTU	1E-115	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400091500}
TAIR10	AT5G39000.1	1E-84	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	59973182	59974750	+
GWHAAZE00000004	mRNA	59973182	59974750	+
GWHAAZE00000004	exon	59973182	59973588	+
GWHAAZE00000004	exon	59973664	59974750	+
GWHAAZE00000004	CDS	59973182	59973588	+
GWHAAZE00000004	CDS	59973664	59974750	+

Transcript Sequence
>GWHTAAZE015861 ATGGTCTCACAAGCGGTAGCCACTATCGTAGTGCTGATAGTAATACCGATAGTACCAGTAGGGACATTGGTGTTCCTGATTTGCTACAATTACATCTTTGCAAAGATGGAAAGAGAATTTCGTAAACTGCTAAAGGAGATATACAAGTTGCAGCTAAGGGTAGATGAGGCCAACAGAGATCTTCAAAGAGTTGGACTTGATGTTGAGCTATGGATCAGAAAAGCCCGCGCAAATGAAGCACGGGTATATGAAATCTTGGAAGAGAAAGGAAGAGTTGAAAAGGGTTGTTCAAATGCGAAGCTGCGTTTCAGACTCTGTGTGAAAGCCAAGAAGACGACTCGGGATATTGTTGAGCTCTTGAGAGGGGGACGGTTTGATAGAATAGCCTACACTCCGCCACCATCGAGTAGAGAACATATTATTCCAATCGCGGCGGAGAATCTTCTTGTCCAGAATCAAGGAGATGAAATTATAGAAGTTGCATCTGCACCACAAATGTGCCGTCACTTTACATTTGCTGAGATTCGGTCTGCCACCGACAACTTTAATGATGCACTTGTCATTGGGAAGGGCGGATTTGGAAAAGTTTACAAAGGATTCGTCGACAATGGAACAACAGCAGTTGCTATAAAGCGGCTGGATCCCATGTCCAACCAAGGAGGCACCGAGTTCCGCACAGAAATCAACATGCTTTCAAAGTTTCGACATTGCAATCTTGTGACTCTCATTGGCTACTGTGATGATGGTCATGAGATGATTCTTGCTTATGAATATATGCTCAATGGAACCTTGGCCGATCATTTGCACCCAAAAGATGGTCGAAATAATCATAGCTCCATTTTATCATGGGTACAACGCCTCAAGATATGCATAGGGGCTGCTCGTGGAATAGAGTATCTTCATACTGGTACGGGTGTTCTGAGAAAGGTCATACATAGGGACGTGAAAAGCTCAAACATTCTGTTGGATGAAAATTGGGCAGCTAAGGTTTCAGACTTTGGGTTATGTAAAATAGGTCCGGCAAACCAGTCATGCACCCATGTCATCACCTGCGTTAAAGGAACCCCAGGCTATTGCGATCCAGAGTATTTCTTAACACATCGATTGACGAAGAAATCTGATGTCTATTCTTTCGGGGTGGTATTGTTTGAAGTTTTATCCGGGAAGCCGGCACTAGATTTTAGACTTCCCAAGGAGCAAAGGAGTCTTGTGGCATGGGCCCAACAAGGTGTACAAGAAAATAACATACATCAGCTTATCGATCCCAATTTGAATTGGGAAATTTGCTCGAATTCTTTGAAAGCGTTTGTGGAAATTGCAGATCAATGTTTGCAAAGTGATCCAAAGAAACGACCTAAAATGGCTGAGGTTGTGGCAAAGCTTGAGTTTGCATTGGCAGCGCAGACGAGCAAGGATTCTTCTCTACTCGCCGAGGATTTCTTTGATTTTGGTGGGACTTATGAAGAGCAAGAAAGGGCGGGTTCCCCTACGTAG

Network for GWHGAAZE015845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	187	459	7.00E-49

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.283
	SRR3591707	mature leaf	0.148
	SRR3591708	Shoot apex	0.072
	SRR3591709	Stem	0.055
	SRR3591710	White floral bud	0.090
	SRR3591711	White flower	0.068
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	8.946
	SRR8316896	Juvenile bud stage	9.031
	SRR8316897	Juvenile bud stage	0.112
	SRR8316894	Third green stage	2.905
	SRR8316900	Third green stage	6.518
	SRR8316901	Third green stage	9.296
	SRR8316898	Complete white stage	1.839
	SRR8316899	Complete white stage	14.037
	SRR8316903	Complete white stage	3.871
	SRR8316902	Silver flowering stage	2.711
	SRR8316904	Silver flowering stage	3.860
	SRR8316905	Silver flowering stage	1.805
	SRR8316906	Gold flowering stage	5.297
	SRR8316907	Gold flowering stage	6.803
	SRR8316908	Gold flowering stage	2.691
SRP132670	SRR6706286	Control	4.111
	SRR6706287	Light intensity 50%	4.593
	SRR6706288	Light intensity 20%	5.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.509
	CNS0095593	Slightly white alabastrum(diploid) 2	6.145
	CNS0095594	Slightly white alabastrum(diploid) 3	8.042
	CNS0095595	Whole white alabastrum(diploid) 2	5.411
	CNS0095596	Whole white alabastrum(diploid) 3	2.879
	CNS0095597	Whole white alabastrum(diploid) 4	4.500
	CNS0095598	Silvery flower (diploied) 1	5.999
	CNS0095599	Silvery flower (diploied) 2	7.437
	CNS0095600	Silvery flower (diploied) 3	11.723
	CNS0095601	Golden flower (diploid) 1	12.002
	CNS0095602	Golden flower (diploid) 2	12.706
	CNS0095603	Golden flower (diploid) 3	12.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.320
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.298
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.425
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.079
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.112
	CNS0095610	Silvery flower (tetraploid) 1	0.746
	CNS0095611	Silvery flower (tetraploid) 2	1.284
	CNS0095612	Silvery flower (tetraploid) 3	2.122
	CNS0095613	Golden flower (tetraploid) 1	1.670
	CNS0095614	Golden flower (tetraploid) 2	2.022
	CNS0095615	Golden flower (tetraploid) 3	1.821
CRA001975	CRR073297	Stem 1	7.286
	CRR073298	Stem 2	7.044
	CRR073299	Stem 3	5.224
	CRR073300	Leaf 1	6.865
	CRR073301	Leaf 2	9.939
	CRR073302	Leaf 3	3.622
	CRR073303	Juvenile bud 1	6.003
	CRR073304	Juvenile bud 2	5.575
	CRR073305	Juvenile bud 3	7.692
	CRR073306	Third green 1	5.577
	CRR073307	Third green 2	3.359
	CRR073308	Third green 3	4.832
	CRR073309	Second white 1	4.854
	CRR073310	Second white 2	6.613
	CRR073311	Second white 3	6.423
	CRR073312	Silver flowering 1	4.807
	CRR073313	Silver flowering 2	3.424
	CRR073314	Silver flowering 3	3.539
	CRR073315	Gold flowering 1	4.877
	CRR073316	Gold flowering 2	7.395
	CRR073317	Gold flowering 3	4.911
	CRR073318	Tawny withering 1	11.203
	CRR073319	Tawny withering 2	13.694
	CRR073320	Tawny withering 3	14.278