Gene detail

Detail information of GWHGAAZE015836

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664250.1	0	PREDICTED: serine/threonine-protein kinase mph1 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q39008\|M3K1_ARATH	9E-23	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|F6H0L8\|F6H0L8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45515.1}
TAIR10	AT1G77720.1	0	putative protein kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	59539147	59546901	-
GWHAAZE00000004	mRNA	59539147	59546901	-
GWHAAZE00000004	exon	59545852	59546901	-
GWHAAZE00000004	exon	59543050	59543250	-
GWHAAZE00000004	exon	59540176	59540337	-
GWHAAZE00000004	exon	59539147	59539509	-
GWHAAZE00000004	CDS	59545852	59546901	-
GWHAAZE00000004	CDS	59543050	59543250	-
GWHAAZE00000004	CDS	59540176	59540337	-
GWHAAZE00000004	CDS	59539147	59539509	-

Transcript Sequence
>GWHTAAZE015852 ATGCTACAAACTGTCTATGCAGGGGCCGATGATCAAATGGCCACTGAATTGGACAACTTATTGTCTCATATGAGTTCACTTGCATTCACAGAAATGGAATGGGATGTGAGCAATCCAGTGGAGACTTCAATTGTTAACGGTCAAGAAGTAAAGCATCAGAGTTTTCAAAACTTGGAAGTGGATGTTAGCGTAAGATCTGATGGAGGAATTTCTTCTCTGATGGGAAAGAAAACTACTGGAATCCAAGAGCAACTGCACAAATTCGGAAATTTTCTACTGAGTGATTGTAGCCACGCGATGACTCAATCTTCAGCTGTTGGTTCATCTTGTGCTACAACAACTTTAATGAATTCAGCGTCTGCTCCTATGCGTAATTCCACCACTTATTGTTCCCATCCTCACCAGAATAGTAGTTCTGATTTGAATTCTCTGCCTGTGACCCTACAAGATATGGTGCACCCACCACAGCTTTCATCGAACCACACCAGTGGAATGTTAGCCGAGCAGCCACCTGTTGGAACCCAAGCTCCCAGCTTGGTTCTTGAATCCCAATCGGAAGTTAAGGAATATGATCTCTCTAAGGGCAAACAAAGCAATGTGCTCAAGGAATGTGAAATTTCAAAACATCCCCCACCTCTCGATGACAAGTCAACCAAAGGGACTACATTTGAAGGTGATATTAGTGATGTAAAGTCTCAAGCACCCGTATCAAAAGACCAATCTTTGGATGTGAAGTTGGAACCTTCAAAGTCAGAAAAACAAGAAAATGTTGTTAGTGGTAGAGCAGCATCAGCGCCTCGTAAAAGAAATTACGATCCTGACTTGTTTTTTAAGGTTAATGGGAAGCTTTATCAAAGACTTGGCAAGATAGGTAGTGGAGGAAGTAGCGAAGTCCACAAAGTCATTTCATCAGATTGCACTATCTATGCCTTGAAAAGAATCAAGCTAAAAGGACGTGACTATGCAACTGCGTATGGGTTTTGTCAAGAGATTCAATATTTAAACAAACTGAAGGGGAAAAGTTACATTATTCAACTCATTGACTATGAGGTGACAGATAAAGCTTTGCTAAAAGAAGTAATGAATGGTTCCATGAGTATTAGGGAAGGAAGATTCAAGGAAGACGGGTATATATACATGGTGCTTGAATACGGTGAGATTGATTTGGCTCACATGCTGTCCCAGAAGTGGAGAGAACTGGATAGCTCTAAGACAACTATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATGCTTCTAGCGGTAAATACCATACATGAGGAACGTATCGTGCACTCGGACTTAAAGCCGGCTAATTTTCTTCTTGTCAAAGGCTCACTTAAGCTGATTGATTTTGGTATTGCCAAAGCAATAATGAGCGACACTACTAACATTCAACGAGATTCACAGGTGGGCACACTTAGTTACATGTCCCCCGAAGCATTCTTGTGTAATGAATCGGATGTGAACGGAAACACCATAAAGTGTGGCCGCCCATCGGACATTTGGTCCCTCGGTTGCATCCTTTACCAAATGGTTTATGGTCAAACCCCCTTCTCCGAATACAAAACATTTTGGGCGAAATTTAAAGTCATCACAAACCCAAACCACGAAATTACATTCGAACCGGTCCCCAACCCGTGGCTACTTGATCTCATGAAGAAGTGTCTTGCATGGGACCGAAATCAACGGTGGAGAATCCCTGAGCTACTTACTCACCCTTTTCTCGTCCCCCGGGCCCCACCCCCAAGTCTCTCCTACCCCCCAAGATGA

Network for GWHGAAZE015836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	284	577	3.50E-55

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TTK

KEGG pathway

KO	Enzyme	pathway	mapID
K08866	TTK, MPS1	Cell cycle	map04110
K08866	TTK, MPS1	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.255
	SRR3591706	second leaf	0.065
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.634
	SRR3591709	Stem	0.132
	SRR3591710	White floral bud	0.112
	SRR3591711	White flower	0.025
	SRR3591712	Green floral bud	0.038
	SRR3591713	Yellow flower	0.040
SRP173429	SRR8316895	Juvenile bud stage	0.283
	SRR8316896	Juvenile bud stage	0.548
	SRR8316897	Juvenile bud stage	0.804
	SRR8316894	Third green stage	0.091
	SRR8316900	Third green stage	0.223
	SRR8316901	Third green stage	0.204
	SRR8316898	Complete white stage	0.048
	SRR8316899	Complete white stage	0.186
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.066
	SRR8316904	Silver flowering stage	0.028
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.045
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.039
SRP132670	SRR6706286	Control	0.219
	SRR6706287	Light intensity 50%	0.374
	SRR6706288	Light intensity 20%	0.205
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.200
	CNS0095593	Slightly white alabastrum(diploid) 2	0.095
	CNS0095594	Slightly white alabastrum(diploid) 3	0.309
	CNS0095595	Whole white alabastrum(diploid) 2	0.050
	CNS0095596	Whole white alabastrum(diploid) 3	0.023
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.746
	CNS0095599	Silvery flower (diploied) 2	0.296
	CNS0095600	Silvery flower (diploied) 3	0.164
	CNS0095601	Golden flower (diploid) 1	0.065
	CNS0095602	Golden flower (diploid) 2	0.217
	CNS0095603	Golden flower (diploid) 3	0.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.225
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.375
	CNS0095610	Silvery flower (tetraploid) 1	0.118
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.118
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.086
	CRR073298	Stem 2	0.874
	CRR073299	Stem 3	0.937
	CRR073300	Leaf 1	0.415
	CRR073301	Leaf 2	0.091
	CRR073302	Leaf 3	0.183
	CRR073303	Juvenile bud 1	0.244
	CRR073304	Juvenile bud 2	0.026
	CRR073305	Juvenile bud 3	0.200
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.004
	CRR073317	Gold flowering 3	0.274
	CRR073318	Tawny withering 1	2.206
	CRR073319	Tawny withering 2	1.765
	CRR073320	Tawny withering 3	1.629