Gene detail

Detail information of GWHGAAZE015800

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32733.1	0	hypothetical protein JCGZ_12025 [Jatropha curcas]
Swissprot	tr\|Q84WU6\|ARFQ_ARATH	8E-177	Auxin response factor 17
trEMBL	tr\|A0A067KCM5\|A0A067KCM5_JATCU	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G77850.1	2E-130	auxin response factor 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	57640573	57649141	-
GWHAAZE00000004	mRNA	57640573	57649141	-
GWHAAZE00000004	exon	57640573	57641337	-
GWHAAZE00000004	exon	57647996	57649141	-
GWHAAZE00000004	CDS	57647996	57649141	-
GWHAAZE00000004	CDS	57640591	57641337	-
GWHAAZE00000004	three_prime_UTR	57640573	57640590	-

Transcript Sequence
>GWHTAAZE015816 ATGGCGACTGAGCTCCGGCAAGTGGATCCCACAATTTGGAGGGCGTGCGCAGGGAATTCCGTCAAGATCCCCACCGTCGATTCAAGGGTTTACTACTTCCCCCAGGGACACGCCGAGCAGTCATCCTCCCCTCCACTGCTGTCCCCGCGCGTCTCTTCACAGCCGTCCGTCTACTGCCGGGTCCTCGCTGTCAAGTACCTCGCCAGCCCCGACACCGACGAGGTCTTCGCGCGCATCCGCCTCGTCCCCCTCGACCGGTCACGTGACAAGGGCGTGGCGGTTCCAGACCTGTCGCGCGAGCCCTACGGGGCGGGGGCCGGCCGGTACGTTTGGGCGGGGGCGGAATGCGACGTGATGGCGGGGAGCGGAGGGGATGTGTCGCGTGATCGGAACGCGATGGCTGCGAGCGGCGGGTATGAGGAGACGGTGGTGTCTTTTGCGAAGATTTTAACGCCGTCGGACGCGAATAACGGGGGAGGGTTTTCGGTGCCGAGGTTCTGCGCGGATTCGATATTCCCGAGGCTGAATTTCGAGGCAGATCCCCCGGTGCAGAACATTTCGGTGACGGACATACACGGCACGGTGTGGGAGTTCCGCCACATATACCGCGGAACACCCCGCCGCCATTTGCTAACTACCGGCTGGAGCAAATTCGTAAACAGCAAGAAATTAGTCGCCGGTGACTCCGTAGTTTTTATGAGGAACACAAGGAGCGGTGAGCTTTTCGTGGGGATTAGAAGAGCGGTTAGGTTTAATGCGGATTGTGGAGGGAGGTGGAATTGCCCTGGAGGATCATCATCACTGAGATTGAAAGGGGATGATGAGGGTTTTGTAGTGAAAGAGGGGTTTTCGAGGAATGGGAGGGGTAAGATTTCGCCAGAGGCGGTGGCGGAGGCTGCTGAGTTGGCAGCACAGGGAATTGCATTCGAGATTGTTTATTATCCGAGGGCTGGGTGGGCTGATTTTGTGGTGAAGGCGGAGACGGTGGAAGAGTCATTGAATGTGTTTTGGACGGCGGGGATGAGAGTGAAGATGGCTATGGAGACGGAGGATTCTTCGAGAATGACGTGGTTTCAAGGCACGGTTTCTTCTGCTATGGTTTCGGAAATTGGGCCGTGGAGGGGATCTCCATGGAGGATGCTTCAGGTTACATGGGATGAACCCGAGGTTCTGCAAAATGTGAAGAGAGTGAGCCCTTGGCAAGTCGAGTATGTGGTCCCCACTCCGTCTCTACATCCCGCATTTCATCCCACAAAGAAATTTAGAGCTCCTCAAAATACAGGCTTGTTACCTGATGGAGGAGAGGGAGAACTCTTATTCCCAGTGTCTTTAAGTAATTCAATGTTGATTGGGGGGCACTTGAACTCCCCCTCATCAAAGAATTACACTTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGACGAAATTTGTTTGTCCAGTTTATCCAACTTCAGAGGCGAAAACGCCAATCAAATGTGCACTGAAGATTTCTTCGGCAACAAAGTGATGGTGCCACTCGTCTCTACCGAGCTGAACATTGGTAGCTCACATTCGGACAATTTATCACCGGATAGTCAAAGCAGCGTGCATTTCTTTGGCACTGATATATCCAACCGAGGCTGCAACTCTTCCACAAAAGATGGTGTTAATTCGTTTCAGTTATTCGGTAAGATCATACACATGAATGAGCCGCCAGTTGACGGCGGTGGTGGTTTTGATGACAGTGGTGGATGCACAGACGATGAAGGGGCTAAGGTGTATAAAGAAAGTGAAGTGGTGAGTAGTAATCAACTCAATCTCTCTTTGACTTACCCATGTACGAAGCTTTTTGATGGGATTGATGTCCAGTACCGTCAAAGAGCTTCAGCTATTGAAGCATGTCGTATATGAAGTAGTGGTTTTTATCGG

Network for GWHGAAZE015800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	146	248	2.20E-23
PF06507.14	Auxin_resp	299	382	6.80E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.860
	SRR3591706	second leaf	1.838
	SRR3591707	mature leaf	1.840
	SRR3591708	Shoot apex	2.277
	SRR3591709	Stem	1.769
	SRR3591710	White floral bud	2.845
	SRR3591711	White flower	3.636
	SRR3591712	Green floral bud	3.626
	SRR3591713	Yellow flower	3.884
SRP173429	SRR8316895	Juvenile bud stage	4.173
	SRR8316896	Juvenile bud stage	5.740
	SRR8316897	Juvenile bud stage	1.842
	SRR8316894	Third green stage	2.119
	SRR8316900	Third green stage	3.203
	SRR8316901	Third green stage	3.075
	SRR8316898	Complete white stage	0.503
	SRR8316899	Complete white stage	3.357
	SRR8316903	Complete white stage	1.265
	SRR8316902	Silver flowering stage	0.360
	SRR8316904	Silver flowering stage	1.121
	SRR8316905	Silver flowering stage	0.301
	SRR8316906	Gold flowering stage	1.895
	SRR8316907	Gold flowering stage	1.960
	SRR8316908	Gold flowering stage	2.185
SRP132670	SRR6706286	Control	4.960
	SRR6706287	Light intensity 50%	4.624
	SRR6706288	Light intensity 20%	4.957
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.470
	CNS0095593	Slightly white alabastrum(diploid) 2	1.400
	CNS0095594	Slightly white alabastrum(diploid) 3	3.298
	CNS0095595	Whole white alabastrum(diploid) 2	1.589
	CNS0095596	Whole white alabastrum(diploid) 3	1.371
	CNS0095597	Whole white alabastrum(diploid) 4	0.994
	CNS0095598	Silvery flower (diploied) 1	2.184
	CNS0095599	Silvery flower (diploied) 2	0.990
	CNS0095600	Silvery flower (diploied) 3	2.244
	CNS0095601	Golden flower (diploid) 1	1.038
	CNS0095602	Golden flower (diploid) 2	1.948
	CNS0095603	Golden flower (diploid) 3	2.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.223
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.139
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.541
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.731
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.882
	CNS0095610	Silvery flower (tetraploid) 1	6.018
	CNS0095611	Silvery flower (tetraploid) 2	4.721
	CNS0095612	Silvery flower (tetraploid) 3	2.609
	CNS0095613	Golden flower (tetraploid) 1	1.511
	CNS0095614	Golden flower (tetraploid) 2	4.512
	CNS0095615	Golden flower (tetraploid) 3	1.372
CRA001975	CRR073297	Stem 1	4.348
	CRR073298	Stem 2	3.756
	CRR073299	Stem 3	3.408
	CRR073300	Leaf 1	2.110
	CRR073301	Leaf 2	3.446
	CRR073302	Leaf 3	2.528
	CRR073303	Juvenile bud 1	2.040
	CRR073304	Juvenile bud 2	1.257
	CRR073305	Juvenile bud 3	3.055
	CRR073306	Third green 1	0.247
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.407
	CRR073310	Second white 2	0.692
	CRR073311	Second white 3	1.002
	CRR073312	Silver flowering 1	0.645
	CRR073313	Silver flowering 2	0.479
	CRR073314	Silver flowering 3	0.445
	CRR073315	Gold flowering 1	1.683
	CRR073316	Gold flowering 2	1.876
	CRR073317	Gold flowering 3	2.771
	CRR073318	Tawny withering 1	1.194
	CRR073319	Tawny withering 2	2.073
	CRR073320	Tawny withering 3	1.831