Gene detail

Detail information of GWHGAAZE015789

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099195.1	2.1971E-101	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
Swissprot	tr\|Q42371\|ERECT_ARATH	2E-60	LRR receptor-like serine/threonine-protein kinase ERECTA {ECO:0000303\|PubMed:8624444} (Precursor)
trEMBL	tr\|A0A067D8C8\|A0A067D8C8_CITSI	4E-95	Uncharacterized protein {ECO:0000313\|EMBL:KDO39219.1} (Fragment)
TAIR10	AT2G26330.1	8E-55	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	57336912	57344135	+
GWHAAZE00000004	mRNA	57336912	57344135	+
GWHAAZE00000004	exon	57336912	57337275	+
GWHAAZE00000004	exon	57338667	57339032	+
GWHAAZE00000004	exon	57343756	57344135	+
GWHAAZE00000004	CDS	57336912	57337275	+
GWHAAZE00000004	CDS	57338667	57339032	+
GWHAAZE00000004	CDS	57343756	57344135	+

Transcript Sequence
>GWHTAAZE015805 TCATTGTTGTTCTTTCTAAATGGTTTCACATTTTGCTTATATACCAAGGATAAATTTGCACTTCTGGCAATCAAAACCAATATCATTGACCATTCAGGCATCTTATCAAACAATTGGTCTGCAATTTCGAACACCTCAATCTGCACCTGGATTGGTGTTTCCTGTGATTTAAACAACCAATCAGTCACTGCCTTGACTCTGTCCAGCATGGGTCTCACCGGCACTGTCAATCCGGCTATCGGAAACCTCTCGTCCCTCATTTTACTTGACATCAGTTACAATAACTTCTCAGGTTCTGTGCCTGAAGAGTTATCTCATTTGCATCATCTTCAATGCTTGCGTTTATCCAACAACAGTTTCACAGGTACAATCCCAACTTCATTGGGCAACTTTACAAAGCTTGAGACATTGAATTTAAGGTTCAATCAGCTTAGAGGTTCTGTACCGGCTGCGATATTCAACATTTCTTCATTGAGAACAATTGACCTCATGCATAATAACCTCTTTGGTAGTCTTCCGGTGGATATCTGTAGTCATTATGTTCCTAAACTCGAAACAATTTATCTGTCCTGGAATCATTTCGAGGGTGAAATTCCGCCGAGTTTGTTCAAATGCAGGGGGCTTCAGCATCTGGCATTGTCAGTGAATGAATTTAGTGGCAGCATATCCATTGAAATTGGCAACTTGACTATGCTCAAGCACTTATGGCTTGGCTATAACAATTTGGAAGGTGAAATTCCAGTGGAGATTGGTAATCTCAAACTTTTGGAGATATTGGACGTACAAAATAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCTCCTTGAAAATAATCAGTCTCGGAGAAAATAAGTTGACCGGAAGCTTCCCAATGGACATTCATTATAATCTCCCAGTTCTTGAAGAGCTATATCTACATAAAAATCAGCTTAACGGTCAGATTCCATCAGGCTTATGGGATTGCAGAGGACTTCGAATCATATCATTGTACGGAAATAAATTCAGAGGGAGCATACCTAAGCAAGTTGGGAACCTTACATTACTCAAAGAGCTGTATCTTTTTGATAACAATTTCACAGGTACCTCCCAAACCTAA

Network for GWHGAAZE015789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	16	56	5.20E-08
PF13855.7	LRR_8	109	168	3.00E-09
PF00560.34	LRR_1	183	205	0.062
PF13855.7	LRR_8	256	315	5.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.079
	SRR3591706	second leaf	0.701
	SRR3591707	mature leaf	1.152
	SRR3591708	Shoot apex	0.047
	SRR3591709	Stem	0.059
	SRR3591710	White floral bud	0.157
	SRR3591711	White flower	0.017
	SRR3591712	Green floral bud	0.122
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.936
	SRR8316896	Juvenile bud stage	0.865
	SRR8316897	Juvenile bud stage	0.080
	SRR8316894	Third green stage	0.092
	SRR8316900	Third green stage	0.197
	SRR8316901	Third green stage	0.345
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.088
SRP132670	SRR6706286	Control	0.241
	SRR6706287	Light intensity 50%	0.201
	SRR6706288	Light intensity 20%	0.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.685
	CNS0095593	Slightly white alabastrum(diploid) 2	0.229
	CNS0095594	Slightly white alabastrum(diploid) 3	2.334
	CNS0095595	Whole white alabastrum(diploid) 2	0.478
	CNS0095596	Whole white alabastrum(diploid) 3	0.714
	CNS0095597	Whole white alabastrum(diploid) 4	0.532
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.416
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.050
	CNS0095602	Golden flower (diploid) 2	0.034
	CNS0095603	Golden flower (diploid) 3	0.039
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.254
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.181
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.137
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.144
	CNS0095610	Silvery flower (tetraploid) 1	0.038
	CNS0095611	Silvery flower (tetraploid) 2	0.070
	CNS0095612	Silvery flower (tetraploid) 3	0.038
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.039
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.777
	CRR073298	Stem 2	0.140
	CRR073299	Stem 3	0.098
	CRR073300	Leaf 1	0.068
	CRR073301	Leaf 2	0.406
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.042
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.041
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.111
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.182
	CRR073315	Gold flowering 1	6.018
	CRR073316	Gold flowering 2	19.944
	CRR073317	Gold flowering 3	11.914
	CRR073318	Tawny withering 1	0.988
	CRR073319	Tawny withering 2	1.386
	CRR073320	Tawny withering 3	0.100