Gene detail

Detail information of GWHGAAZE015775

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099195.1	6.5715E-104	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
Swissprot	tr\|Q9M2Z1\|BAME2_ARATH	4E-58	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 (Precursor)
trEMBL	tr\|A0A068VI92\|A0A068VI92_COFCA	7E-96	Coffea canephora DH200=94 genomic scaffold, scaffold_1096 {ECO:0000313\|EMBL:CDP20322.1}
TAIR10	AT2G26330.1	3E-48	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	56876069	56880970	+
GWHAAZE00000004	mRNA	56876069	56880970	+
GWHAAZE00000004	exon	56876069	56876462	+
GWHAAZE00000004	exon	56877731	56878096	+
GWHAAZE00000004	exon	56880591	56880970	+
GWHAAZE00000004	CDS	56876069	56876462	+
GWHAAZE00000004	CDS	56877731	56878096	+
GWHAAZE00000004	CDS	56880591	56880970	+

Transcript Sequence
>GWHTAAZE015791 ATGGCGAGAAATTGTTTCATTTTCGCGGTTTCATTGTTGTTGTTTCTAAATGGTTTCACATTTTGCTTATATACTAAAGATAAATTTGCACTTTTGGCAATCAAAACCAATATTGTTGACGATTCAGGCATTTTATCAAACAATTGGTCCGCAACTCCCAACGCCTCAATCTGCAACTGGATTGGTGTTTCCTGTGATTTAAACAAGCAATCTGTCACTGCTTTGAATCTCTCTGGCATGGGTCTCGCCGGCACTGTCACTTCGGTTATCAAAAACCTCTCGTCCCTCACTTCACTTGACATCAGTTACAATAACTTCTCGGGTTCTGTGCCTGAAGAGTTATCTCACTTGCATCATCTTCAACAATTGCTTTTATCCAACAACAGTTTCACAGGTACAATCCCAGCTTCATTGGGCAATATTACCAAGCTTGAGACATTGAATTTAAGTTGCAATCAGCTTACAGGTTCTGTACCGGCTACGATATTCAACATTTCTTCATTGAGAGCAATTGATCTCGGAGCTAATAACTTATTTGGTAGTCTTCCGGTGGATATCTGTAGTCATTATGTTCCTAAACTCGAAAGAATTTTGCTTGCCTTCAATCGTTTCGAGGGGAAATTTCCACCGAGTTTATTCAAATGCAGGGAGCTTCAGTCTCTTTCATTGTCATTCAATGAATTTAGTGGCAGCATACCCATTGAAATAGGCAACTTGACCATGCTCAAGAGATTATTTCTTGGCCACAACAATTTAGAAGGTGAAATTCCAGCAGAGATTGGTAATCTCAAACTTTTGGAGAAATTGAACATACGGAATAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCTCTTTGAAAATAATCGATCTCGGAAATAATAAGCTGACTGGAAGCTTCCCAATGGACATTCATTATAATCTCCCTGTTCTTGAAGAGCTCCATCTATATAAAAATCAGCTTAAGGGTCAGATTCCATCGGGCTTATGGGATTGCAAAGGACTTAAAATTATTTCATTGTACGCAAATAAATTCACAGGGAGCATATCTAAGAAAGTTGGGAACCTTACATTACTCAAACGGCTGTATCTTCATGATAACAATTTCACAGGTACCTCCCAAACCTAA

Network for GWHGAAZE015775

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	7.20E-08
PF00560.34	LRR_1	95	117	1.1
PF13855.7	LRR_8	119	178	4.50E-09
PF13855.7	LRR_8	266	325	1.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.050
	SRR3591706	second leaf	0.986
	SRR3591707	mature leaf	4.394
	SRR3591708	Shoot apex	0.076
	SRR3591709	Stem	0.072
	SRR3591710	White floral bud	0.125
	SRR3591711	White flower	0.583
	SRR3591712	Green floral bud	0.337
	SRR3591713	Yellow flower	0.069
SRP173429	SRR8316895	Juvenile bud stage	0.076
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.039
	SRR6706287	Light intensity 50%	0.092
	SRR6706288	Light intensity 20%	0.078
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.104
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.234
	CNS0095599	Silvery flower (diploied) 2	0.238
	CNS0095600	Silvery flower (diploied) 3	0.072
	CNS0095601	Golden flower (diploid) 1	0.186
	CNS0095602	Golden flower (diploid) 2	0.207
	CNS0095603	Golden flower (diploid) 3	0.050
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.013
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.020
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.033
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.041
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.252
	CRR073316	Gold flowering 2	0.414
	CRR073317	Gold flowering 3	0.603
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000