Gene detail

Detail information of GWHGAAZE015771

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099195.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	3E-120	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT4G20140.1	1E-101	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	56507794	56521603	+
GWHAAZE00000004	mRNA	56507794	56521603	+
GWHAAZE00000004	exon	56507794	56508184	+
GWHAAZE00000004	exon	56509461	56509826	+
GWHAAZE00000004	exon	56511870	56512232	+
GWHAAZE00000004	exon	56513572	56513643	+
GWHAAZE00000004	exon	56518204	56519256	+
GWHAAZE00000004	exon	56521452	56521603	+
GWHAAZE00000004	CDS	56507794	56508184	+
GWHAAZE00000004	CDS	56509461	56509826	+
GWHAAZE00000004	CDS	56511870	56512232	+
GWHAAZE00000004	CDS	56513572	56513643	+
GWHAAZE00000004	CDS	56518204	56519256	+
GWHAAZE00000004	CDS	56521452	56521603	+

Transcript Sequence
>GWHTAAZE015787 ATGGCGAGAAATTCTTTCATTTTCGCGGTTTCATTGTTGTTGTTAAATGGTTTCACATTTTGCTTATATACTAAGGATAAATTTGCACTTCTGGCAATCAAAACCAATATCATTGACCATTCAGGCATTTTATCAAACAATTGGTCCGCAACTTCCAACGCCTCAATCTGCACCTGGATTGGTGTTTCCTGTGATTTAAACAACCAATTTGTCACTGCTTTGAATCTCTCCGGCATGGGTCTTGCCGGCATTGTCACTCCGCTTATCGGAAACCTCTCGTCCCTCACTTCACTTGACATCAGTTACAATAACCTCTCTGGTTCTGTGCCTGAAGAGTTATCTCACTTGTATCATCTTCAACAATTGCTTTTATCCAACAACAGTTTCACAGGTACAATCCCAGCTTCATTGGGCAATATTACCAAGCTTGAGACATTGAATTTAAGTTGCAATCAGCTTACAGGTTCTGTACCAGCTGCGATATTCAACATTTCTTCATTGAGAGCAATTGATCTCAAAGCTAATAACTTATTTGGTAGTCTTCCGGTGGATATCTGTAGTCGTTATGTTCCTAAACTTGAAAAAATTAGGCTTGCCTTCAATCGTTTCGAGGGGAAACTTCCACCGAGTTTATTTAAATGCAGGGAGCTTCAGTCTCTTTCATTGTCAGTCAATGAATTTAGTGGCAGCATACCCATTGAACTAGGCAACTTGACCATGCTCAAGGAATTATTCCTTGGCCACAACAATTTAGAAGGTGAAATTCCAGTGGAGATTGGTAATCTCAAACTTTTGGAGATATTGGACATACAAAATAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCTCTTTGAAAAGGATCAGTCTCGAAAAAAATAAGCTGACTGGAAGCTTCCCAATGGACATTAATTGTAATCTCCCTGTTCTTGAAAGGCTCTATCTTTATAAAAATCAGCTTAAGGGTCAGATTCCATCGTGCTTATGGGATTGCAAAGGACTTCAAATTATATTATTGCACGAAAATAAATTCACAGGGAGCATACCTAAGAAAGTAGGGAACCTTACATTGCTCAAAGTTCTGGATCTTGCTTTTAACAATTTCACAGGGAGCATAGCTAAGAAAGTTGGGAACCTTACATTGCTCAAAGCTCTGTATCTTGCTTTTAACAATTTCACAGGAACATTACCAAGTGAGTTTGGTAAGCTTAATTTAGAAAGACTATATCTTCTTCAGAACAGCTTAACCGGCCTTATACCTTTCGAAATCTTCAATATCTCAACAATCACTCATATTTCTTTGTCATTCAATCACTTCTTGGGACATCTTTCATCGATCATGGGGCTTCGGACTCCCAATCTTGAATGCCTTTACTTAGGTGGCAATAGTCTCAGTGGACCAATCCCAAGCTCTATCTCGAATGCGTCTAAGCTTAATTTGATTGCGTTGTTTAACAACTCATTTACTGGCTTCATACCCAACACACTTGGTAATTTAAGAGATTTGCGAGAACTGTTTCTTTCAGGAAACAATTTGACAGGGGAAGTTTCCACTCCAGAATTAAGATTCTTTGATTCTTTGAGTAATTGCAAGAATTTGGAGCTTTTGACAATATCGCAAAATCAATTGAATGGAATCCTCCCAACTTCAGTTGCGAATCTTTCAACTTCTTTTCGTAAGTTTTACGCATCTGGAAGCAAAATTAAGGGCAAAATTCCAATGGGAATAGGCAACTTGAGTGGCTTGTTGACCCTATATTTAGATAGCAACGAGTTGACTGGGTTTATCCCATCAACGCTCGGAAGATTGAAAAATCTTCAACAATTGAATCTTGCAGACAATGATTTGAAAGGATCTATACCAAACGATCTTTGCCAGTTAAAGAGGTTGGGAGACTTATATTTAAGTGATAATAAACTTGACGGACCTATACCGTCATGTTTAGGAGAACTTAGTTCTATGGAAAAGCTATTCTTAGATTCTAATAATTTGACTTCGATAATACCATCAACCTTGTGGAGCCTGGAAGATCTCTTGTACCTAAACTTCTCCACGAATTCTCTTATTGGTAGTTTACCATCAGATATTGGCAATTTGAAGATGATAACAAAAATGGACTTATCGTTTAATCGGTTTTCGGGTCATATCCCAAGTACCATCGGGAGCAACCAAATGCTAACTTTACTCTCGTTTGCACATAATGCACTACAAGGATCCATTCCTCAATCGTATAAGTTTGCTCTTCCTAGAGAGGGTGTTCTTAACATGTGGCCTTACAGTGTTCTCATTTTTACTTTTGGTATATTTTCCTTTGGTTCCGATATTGTTGTGAAAGAACATTGGAAATTGGAGCTTAACTTTTATGTTATCTATTCTCAATTTTGA

Network for GWHGAAZE015771

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	25	65	4.20E-07
PF00560.34	LRR_1	94	116	1.5
PF13855.7	LRR_8	118	177	3.30E-09
PF13855.7	LRR_8	191	251	8.80E-07
PF13855.7	LRR_8	456	516	1.50E-06
PF13855.7	LRR_8	586	644	6.70E-09
PF13855.7	LRR_8	657	716	4.70E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13420	FLS2	MAPK signaling pathway - plant	map04016
K13420	FLS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.126
	SRR3591706	second leaf	0.320
	SRR3591707	mature leaf	1.470
	SRR3591708	Shoot apex	0.121
	SRR3591709	Stem	0.103
	SRR3591710	White floral bud	0.055
	SRR3591711	White flower	0.362
	SRR3591712	Green floral bud	0.130
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.311
	SRR8316896	Juvenile bud stage	3.465
	SRR8316897	Juvenile bud stage	0.034
	SRR8316894	Third green stage	1.384
	SRR8316900	Third green stage	0.698
	SRR8316901	Third green stage	0.743
	SRR8316898	Complete white stage	0.366
	SRR8316899	Complete white stage	0.841
	SRR8316903	Complete white stage	1.075
	SRR8316902	Silver flowering stage	0.085
	SRR8316904	Silver flowering stage	0.320
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	1.185
	SRR8316907	Gold flowering stage	0.505
	SRR8316908	Gold flowering stage	0.556
SRP132670	SRR6706286	Control	3.027
	SRR6706287	Light intensity 50%	1.563
	SRR6706288	Light intensity 20%	0.957
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.419
	CNS0095593	Slightly white alabastrum(diploid) 2	0.273
	CNS0095594	Slightly white alabastrum(diploid) 3	0.752
	CNS0095595	Whole white alabastrum(diploid) 2	0.440
	CNS0095596	Whole white alabastrum(diploid) 3	0.033
	CNS0095597	Whole white alabastrum(diploid) 4	0.500
	CNS0095598	Silvery flower (diploied) 1	2.397
	CNS0095599	Silvery flower (diploied) 2	1.780
	CNS0095600	Silvery flower (diploied) 3	0.552
	CNS0095601	Golden flower (diploid) 1	3.354
	CNS0095602	Golden flower (diploid) 2	2.588
	CNS0095603	Golden flower (diploid) 3	2.277
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.372
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.189
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.021
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.026
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.123
	CNS0095610	Silvery flower (tetraploid) 1	0.139
	CNS0095611	Silvery flower (tetraploid) 2	0.402
	CNS0095612	Silvery flower (tetraploid) 3	0.150
	CNS0095613	Golden flower (tetraploid) 1	0.098
	CNS0095614	Golden flower (tetraploid) 2	0.212
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.002
	CRR073298	Stem 2	1.380
	CRR073299	Stem 3	0.852
	CRR073300	Leaf 1	0.084
	CRR073301	Leaf 2	0.130
	CRR073302	Leaf 3	0.034
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.063
	CRR073305	Juvenile bud 3	0.036
	CRR073306	Third green 1	0.018
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.069
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.207
	CRR073315	Gold flowering 1	5.336
	CRR073316	Gold flowering 2	13.635
	CRR073317	Gold flowering 3	8.807
	CRR073318	Tawny withering 1	4.364
	CRR073319	Tawny withering 2	3.645
	CRR073320	Tawny withering 3	0.486