Gene detail

Detail information of GWHGAAZE015768

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	4.5498E-173	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	3E-77	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|A0A068VCD4\|A0A068VCD4_COFCA	4E-132	Coffea canephora DH200=94 genomic scaffold, scaffold_218 {ECO:0000313\|EMBL:CDP18217.1}
TAIR10	AT3G47570.1	4E-68	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	56257121	56264422	+
GWHAAZE00000004	mRNA	56257121	56264422	+
GWHAAZE00000004	exon	56257121	56257514	+
GWHAAZE00000004	exon	56261488	56262450	+
GWHAAZE00000004	exon	56264046	56264422	+
GWHAAZE00000004	CDS	56257121	56257514	+
GWHAAZE00000004	CDS	56261488	56262450	+
GWHAAZE00000004	CDS	56264046	56264422	+

Transcript Sequence
>GWHTAAZE015784 ATGCTTTTAAGTTTTAACAACTTTTGGGCAGGTGAAATTCCAGAGGAGATTGGTAATCTCAAACTTTTGGAGATATTGAGCATACCAAGTAGCTCTCTAACAGGACCTATTCCTAATGTTGTCTTTAACATGTCCTCTTTGATGGAGATCAATTTCCAAGAAAATAACCTGAATGGAACCCTCCCAATGGACATTCATTTTGAGCTCCCTGTTCTTGACACTCTCGCTCTTGCCGAAAATCAGCTCAAGGGTCAGCTTCCATCTTGCTTATGGGATTGCAAAGGACTTCAAATTATATCATTGTCCAAAAACAAATTCACAGGAAGCATACCTAAGAAAGTTGGGAACCTTACATTGCTCAAAGCTCTGTATCTTGCTTTTAACAATTTAACAGGAACATTACCAAGTGAGATTGGTAAGCTTAATTTGGAAAGACTCGTTCTTGTTCAGAATAGCTTAACCGGCCTGATACCTTTCGAAATCTTCAATATCTCAACAATCATTCAGATTTCTTTGTCATTCAATCATTTCTCGGGCCATCTTCCATCGAGCTTGGGGCTTTGGACACCCAATGTTGAAGGCCTTTACGTAAGTGGCAATAGGCTCAGTGGATCAATCCCAAGCTCTGTCTCAAATGCGTCTAAGCTTACCCGGATAGACATGTCTAGCAACTTTTTTACTGGCTTTTTACCCAACACACTTGGCAATTTAAAAGATTTACAGAGACTCTATGTTGGTGGAAACAATTTGACTGGGGAAGCTTCCATATCAGAATTGAGATTCTTCGATTCTTTGAGTAATTGCAAGAATTTGGACCTTCTGTCGATACCGCGAAATCAATTGAATGGAATCTTCCCAGCTTCGGTTGCAAATCTTTCCACTTCTCTTCATCTTTTTAATGCATTTGGAAACAAAATTAAGGGCAAAATTCCAATGGGAATAGGCAACTTGAGTGGCTTGTTGACCCTAGATTTATATAGCAACGAGTTGACTGGGTTCATCCCATCAACGCTCGGAAGATTGAAAAATCTTGAACAATTGTTTCTTGACGACAATGATTTGAAAGGATTCATACCAAATGATCTTTGTCAATTAAAAAGGTTAGGAGAATTATATTTGAGTGATAATAAACTCGACGGACCTATACCGTCATGTTTAGGAGAACTTCGTTCTATGATAAGGCTGTCATTAGGTTCTAATAATTTGACTTCAACAATACCATCAACCTTGTGGAGCCTAAAATATCTTTTGCATCTAAACTTCTCCACAAATTCTCTTATGGGTAGTTTACCATCAGATATTGGAAATCTGAAGGTTATAATAGAAATGGACTTATCGTTGAATCGGTTTTCGGGTCAATATATAAGAGAAGGAATAGTATCCACAAAAGGAGACGTCTATAGCTATGGTATTCTATTAATGGAAACATTCACAAGGAAGAAGCCAATAGATGAAATGTTTTCCGACAATTTGACTATGAGGAATTGGGTTTATGAAGCATCACTCAGTTCAATAGTTCAAGTTGTGGACACCAATTTGATAGGAAAAGAATATGAAGATTTCTTGCCCAAGAAGGAATGTGCCTCATCCATTTTGCATCTGGCCTTGGATTGTTTCGCAAATATTCCTACACAAAGGATCAGCATGGAAGATGTCGTGGTTAGACTCAACAAAATAAAAAATACTTTTCTAATGAACGCTGGAAAAGGTCTCATGACAGAGGTAGTAAAGTAA

Network for GWHGAAZE015768

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	190	250	1.00E-07
PF13855.7	LRR_8	320	378	2.30E-08
PF07714.18	PK_Tyr_Ser-Thr	454	555	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.073
	SRR3591706	second leaf	0.646
	SRR3591707	mature leaf	2.000
	SRR3591708	Shoot apex	0.218
	SRR3591709	Stem	0.506
	SRR3591710	White floral bud	0.098
	SRR3591711	White flower	0.038
	SRR3591712	Green floral bud	0.233
	SRR3591713	Yellow flower	0.022
SRP173429	SRR8316895	Juvenile bud stage	0.148
	SRR8316896	Juvenile bud stage	0.019
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.049
	SRR8316900	Third green stage	0.128
	SRR8316901	Third green stage	0.041
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.104
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.059
	SRR6706287	Light intensity 50%	0.034
	SRR6706288	Light intensity 20%	0.080
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.013
	CNS0095593	Slightly white alabastrum(diploid) 2	0.018
	CNS0095594	Slightly white alabastrum(diploid) 3	0.028
	CNS0095595	Whole white alabastrum(diploid) 2	0.062
	CNS0095596	Whole white alabastrum(diploid) 3	0.195
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.022
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.021
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.008
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000