Detail information of GWHGAAZE015729


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009367329.10PREDICTED: probable eukaryotic translation initiation factor 5-1 [Pyrus x bretschneideri]
Swissprottr|P55876|IF5_MAIZE8E-161Eukaryotic translation initiation factor 5
trEMBLtr|F6H0N4|F6H0N4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45531.1}
TAIR10AT1G77840.17E-123Translation initiation factor IF2/IF5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene5487843054879497-
GWHAAZE00000004mRNA5487843054879497-
GWHAAZE00000004exon5487871254879497-
GWHAAZE00000004exon5487843054878678-
GWHAAZE00000004CDS5487871254879497-
GWHAAZE00000004CDS5487843054878678-
Transcript Sequence

Network for GWHGAAZE015729

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01873.18eIF-5_eIF-2B111272.50E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03262EIF5 RNA transport map03013
Apoptosis - flymap04214

Gene Ontology

GO term OntologyName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.970
SRR3591706second leaf17.476
SRR3591707mature leaf13.788
SRR3591708Shoot apex19.780
SRR3591709Stem32.522
SRR3591710White floral bud44.817
SRR3591711White flower52.790
SRR3591712Green floral bud35.019
SRR3591713Yellow flower42.764
SRP173429 SRR8316895Juvenile bud stage 54.372
SRR8316896Juvenile bud stage 75.378
SRR8316897Juvenile bud stage 34.977
SRR8316894Third green stage 41.797
SRR8316900Third green stage 149.345
SRR8316901Third green stage 143.512
SRR8316898Complete white stage 82.032
SRR8316899Complete white stage 134.282
SRR8316903Complete white stage 123.289
SRR8316902Silver flowering stage72.178
SRR8316904Silver flowering stage75.079
SRR8316905Silver flowering stage36.791
SRR8316906Gold flowering stage 119.797
SRR8316907Gold flowering stage 111.348
SRR8316908Gold flowering stage 161.274
SRP132670SRR6706286Control219.680
SRR6706287Light intensity 50%213.930
SRR6706288Light intensity 20%213.633
CNP0000432CNS0095592Slightly white alabastrum(diploid) 179.436
CNS0095593Slightly white alabastrum(diploid) 268.788
CNS0095594Slightly white alabastrum(diploid) 373.794
CNS0095595Whole white alabastrum(diploid) 291.057
CNS0095596Whole white alabastrum(diploid) 394.983
CNS0095597Whole white alabastrum(diploid) 493.871
CNS0095598Silvery flower (diploied) 159.469
CNS0095599Silvery flower (diploied) 252.279
CNS0095600Silvery flower (diploied) 3147.988
CNS0095601Golden flower (diploid) 167.294
CNS0095602Golden flower (diploid) 2105.142
CNS0095603Golden flower (diploid) 3110.374
CNS0095604Slightly white alabastrum(tetraploid) 1104.745
CNS0095605Slightly white alabastrum(tetraploid) 295.158
CNS0095606Slightly white alabastrum(tetraploid) 3154.035
CNS0095607Whole white alabastrum(tetraploid) 182.582
CNS0095608Whole white alabastrum(tetraploid) 280.654
CNS0095609Whole white alabastrum(tetraploid) 3141.423
CNS0095610Silvery flower (tetraploid) 1145.012
CNS0095611Silvery flower (tetraploid) 2110.337
CNS0095612Silvery flower (tetraploid) 3144.370
CNS0095613Golden flower (tetraploid) 1102.830
CNS0095614Golden flower (tetraploid) 2126.656
CNS0095615Golden flower (tetraploid) 3153.517
CRA001975CRR073297Stem 1181.818
CRR073298Stem 2173.962
CRR073299Stem 3180.276
CRR073300Leaf 1193.632
CRR073301Leaf 2185.594
CRR073302Leaf 3187.376
CRR073303Juvenile bud 1177.364
CRR073304Juvenile bud 2173.083
CRR073305Juvenile bud 3186.592
CRR073306Third green 1205.493
CRR073307Third green 2200.186
CRR073308Third green 3196.352
CRR073309Second white 186.062
CRR073310Second white 290.176
CRR073311Second white 383.974
CRR073312Silver flowering 181.193
CRR073313Silver flowering 281.607
CRR073314Silver flowering 373.396
CRR073315Gold flowering 162.936
CRR073316Gold flowering 281.716
CRR073317Gold flowering 339.949
CRR073318Tawny withering 1140.176
CRR073319Tawny withering 2110.374
CRR073320Tawny withering 3135.164