Gene detail

Detail information of GWHGAAZE015727

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32733.1	0	hypothetical protein JCGZ_12025 [Jatropha curcas]
Swissprot	tr\|Q84WU6\|ARFQ_ARATH	7E-178	Auxin response factor 17
trEMBL	tr\|A0A067KCM5\|A0A067KCM5_JATCU	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G77850.1	3E-131	auxin response factor 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	54778092	54786734	-
GWHAAZE00000004	mRNA	54778092	54786734	-
GWHAAZE00000004	exon	54778092	54778856	-
GWHAAZE00000004	exon	54785589	54786734	-
GWHAAZE00000004	CDS	54785589	54786734	-
GWHAAZE00000004	CDS	54778110	54778856	-
GWHAAZE00000004	three_prime_UTR	54778092	54778109	-

Transcript Sequence
>GWHTAAZE015743 ATGGCGACTGAGCTCCGGCAAGTGGATCCCACAATTTGGAGGGCGTGCGCAGGGAATTCCGTCAAGATCCCCACCGTCGATTCAAGGGTTTACTACTTCCCCCAGGGACACGCCGAGCAGTCATCCTCCCCTCCACTGCTGTCCCCGCGCGTCTCTTCACAGCCGTCCGTCTACTGCCGGGTCCTCGCTGTCAAGTACCTCGCCAGCCCCGACACCGACGAGGTCTTCGCGCGCATCCGCCTCGTCCCCCTAGACCGGTCACGTGACACGCGCGTGGCGGTTCCGGACCTGTCGCGCGAGCCCTACGGGGCGGGGGCCGGCCGGTACGTTTGGGCGGGGGCGGAATGCGACGTGATGGCGGGGAGCGGAGGGGATGTGTCGAGTGATCGGAACGTGATGGCGGCGAGCGGCGGGTATGAGGAGACGGTGGTGTCGTTTGCGAAGATTTTAACGCCGTCGGACGCGAATAACGGGGGAGGGTTTTCGGTGCCGAGGTTCTGCGCGGATTCGATATTCCCGAGGCTGAATTTCGAGGCAGATCCCCCGGTGCAGAACATTTCGGTGACGGACATACACGGCACGGTGTGGGAGTTCCGCCACATATACCGCGGAACACCCCGCCGCCATTTGCTAACTACCGGCTGGAGCAAATTCGTAAACAGCAAGAAATTAGTCGCCGGTGACTCCGTAGTTTTTATGAGGAACACAAGGAGCGGTGAGCTTTTCGTGGGGATTAGAAGAGCGGTTAGGTTTAATGCGGATTGTGGAGGGAGGTGGAATTGCCCTGGAGGATCATCATCACTGAGATTGAAAGGGGATGATGAGGGTTTTGTAGTGAAAGAGGGGTTTTCGAGGAATGGGAGGGGTAAGATTTCGCCAGAGGCGGTGGCGGAGGCTGCTGAGTTGGCAGCACAGGGAATGGCATTCGAGATTGTTTATTATCCGAGGGCTGGGTGGGCTGATTTTGTGGTGAAGGCGGAGACGGTGGAAGAGTCATTGAATGTGTTTTGGACGGCGGGGATGAGAGTGAAGATGGCTATGGAGACGGAGGATTCTTCGAGAATGACATGGTTTCAAGGCACGGTTTCTTCGGCTATGGTTTCGGAAATTGGGCCGTGGAGGGGATCTCCATGGAGGATGCTTCAGGTTACATGGGATGAACCTGAGGTTCTGCAAAATGTGAAGAGAGTGAGCCCTTGGCAAGTCGAGTATGTGGTCCCCACTCTGTCTCTACATCCCGCATTTCATCCCACAAAGAAATTTAGAGCTCCTCAAAATACAGGCTTGTTACCTGATGGAGGAGAGGGAGAACTCTTATTCCCAATGTCTTTAAGTAATTCAATGACGATTGGGGGGCACTTGAACTCCCCCTCATCGAAGAATTACACTTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAGACGAAATTTGTTTGTCCAGTTTATCCAACTTCAGAGGCGAAAACGCCAATCAAATGTGCACTGAAGATTTCTTCGGCAACAAAGTGATGGCGCCACTCGTCTCTACCGAGCTGAACATTGGTAGCTCACATTCGGACAATTTATCGCCGGATAGTCAAAGCAGCGTGCATTTCTTTGGCACTGATATATCCAACCGAGGCTGCAACTCTTCCACAAAAGATGGTGTTAATTCGTTTCAGTTATTCGGTAAGATCATACACATGAATGAGCCGCCAGTTGACGGCGGTGGTGGTTTTGATGACAGTGGTGGATGCACAGACGATGAAGGGGCTAAGGTGTATAAAGAAAGTGAAGTGGTGAGTAGTAATCAACTCAATCTCTCTTTGACTTACCCATGTACGAAGCTTTTTGATGGGATTGATGTCCAGTACCGTCAAAGAGCTTCAGCTATTGAAGCATGTCGTATATGAAGTAGTGGTTTTTATCGG

Network for GWHGAAZE015727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	146	248	2.20E-23
PF06507.14	Auxin_resp	299	382	3.70E-28

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.898
	SRR3591706	second leaf	1.609
	SRR3591707	mature leaf	1.836
	SRR3591708	Shoot apex	1.468
	SRR3591709	Stem	1.386
	SRR3591710	White floral bud	1.516
	SRR3591711	White flower	2.845
	SRR3591712	Green floral bud	2.597
	SRR3591713	Yellow flower	2.567
SRP173429	SRR8316895	Juvenile bud stage	3.879
	SRR8316896	Juvenile bud stage	5.210
	SRR8316897	Juvenile bud stage	2.051
	SRR8316894	Third green stage	1.268
	SRR8316900	Third green stage	2.706
	SRR8316901	Third green stage	3.088
	SRR8316898	Complete white stage	0.765
	SRR8316899	Complete white stage	3.720
	SRR8316903	Complete white stage	1.019
	SRR8316902	Silver flowering stage	1.036
	SRR8316904	Silver flowering stage	0.999
	SRR8316905	Silver flowering stage	0.403
	SRR8316906	Gold flowering stage	2.226
	SRR8316907	Gold flowering stage	1.370
	SRR8316908	Gold flowering stage	1.382
SRP132670	SRR6706286	Control	4.389
	SRR6706287	Light intensity 50%	5.166
	SRR6706288	Light intensity 20%	5.260
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.187
	CNS0095593	Slightly white alabastrum(diploid) 2	1.759
	CNS0095594	Slightly white alabastrum(diploid) 3	2.156
	CNS0095595	Whole white alabastrum(diploid) 2	1.334
	CNS0095596	Whole white alabastrum(diploid) 3	1.491
	CNS0095597	Whole white alabastrum(diploid) 4	0.978
	CNS0095598	Silvery flower (diploied) 1	1.417
	CNS0095599	Silvery flower (diploied) 2	0.875
	CNS0095600	Silvery flower (diploied) 3	2.569
	CNS0095601	Golden flower (diploid) 1	1.050
	CNS0095602	Golden flower (diploid) 2	1.965
	CNS0095603	Golden flower (diploid) 3	1.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.551
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.335
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.520
	CNS0095610	Silvery flower (tetraploid) 1	1.568
	CNS0095611	Silvery flower (tetraploid) 2	1.593
	CNS0095612	Silvery flower (tetraploid) 3	0.713
	CNS0095613	Golden flower (tetraploid) 1	0.598
	CNS0095614	Golden flower (tetraploid) 2	0.980
	CNS0095615	Golden flower (tetraploid) 3	0.642
CRA001975	CRR073297	Stem 1	3.540
	CRR073298	Stem 2	2.946
	CRR073299	Stem 3	2.775
	CRR073300	Leaf 1	2.141
	CRR073301	Leaf 2	3.194
	CRR073302	Leaf 3	2.363
	CRR073303	Juvenile bud 1	2.086
	CRR073304	Juvenile bud 2	1.216
	CRR073305	Juvenile bud 3	3.444
	CRR073306	Third green 1	0.108
	CRR073307	Third green 2	0.133
	CRR073308	Third green 3	0.060
	CRR073309	Second white 1	0.933
	CRR073310	Second white 2	0.706
	CRR073311	Second white 3	0.856
	CRR073312	Silver flowering 1	0.837
	CRR073313	Silver flowering 2	0.357
	CRR073314	Silver flowering 3	1.044
	CRR073315	Gold flowering 1	1.794
	CRR073316	Gold flowering 2	1.942
	CRR073317	Gold flowering 3	0.527
	CRR073318	Tawny withering 1	1.113
	CRR073319	Tawny withering 2	1.702
	CRR073320	Tawny withering 3	1.279