Gene detail

Detail information of GWHGAAZE015715

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	5.5881E-173	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	2E-75	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	1E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT3G47570.1	2E-63	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	54297674	54300740	+
GWHAAZE00000004	mRNA	54297674	54300740	+
GWHAAZE00000004	exon	54297674	54298859	+
GWHAAZE00000004	exon	54300364	54300740	+
GWHAAZE00000004	CDS	54297674	54298859	+
GWHAAZE00000004	CDS	54300364	54300740	+

Transcript Sequence
>GWHTAAZE015731 ATGCAGATTTCTTTGTCGTCGAATCACTTCTCGGGCCATCTTCCATCGAGCATGGGGCTCTGGACTCCCAATCTTGAAGGCCTTTACCTAGGTGACAATAGGCTCAGTGGAACAATCCCAAGCTCTATCTCAAATGCGTCTAAGCTTACCTCCATAGAAATGACTGACAACTCATTTACTGGCTTCATACCCAACATGCTTGGTAATTTAAGAGATTTGCGACGGCTCCTTGTTGGAGAAAATAATTTGACCGGGGAAGTTTCCACTCGAGAATTAAGATTCTTCGATTCTTTGAGTAATTGCAAGAATTTGTACCTTTTGTCGATATCGCTAAATCAATTGAATGGAGTCCTCCCAGCTTCAGTTGCAAATCTTTCCACTTCTCTTCGTAATTTTGAAGCATTTGGAAACAAAATTAAGGGCGAAATTCCAATGGGAATAGGCAACTTGAGTGGCTTATCAGCCCTAAGTTTAGATAGCAACGAGTTGACTGGGTTCATCCCATCATCCCTCGGAAGATTGAAAAATCTTGAACAATTGTATCTTGAACACAACAATTTAAAAGGATCCATACCAAATGATTTTTGTCACTTAGAAAGGTTGGGAGACTTATATTTGAGTGATAATAAACTCGACGGACCTATACCGTCATGTTTAGGAGAACTTAGTTCTATGACAAGGCTGTTCTTAGATTCTAATAGTTTGACTTCGACAATACCATCAACCTTGTGGAGCCTAGAAGATCTGTTGTACCTAAACTTCTCCACAAATTCTCTTACTGGTAGTTTACCGTCATATATTCGAAATATGAAGGTGATAACAGAAATGGACTTATCGTTGAATCATTTTTCGGGTCGTATCCCAAGTACCATTGGGAGCGGCCAAATGCTAACTTTTCTCTCGTTTGCGCATAATGAACTACAAGGATCCATTCCTCAATCATTTGGTAACTTGGTAAACTTAGAATTGTTGGATCTATCAAATAACAATTTGTCTGGAACGATACCCAAATCCCTTGAGGCGCTTAGGTATCTCCAATACTTTAATGTGTCTTTCAATAGATTAGAAGGAGAAATCCCCATCGGAGGACATTTTGCTAACTTTACTGCACAGTCTTTTATGCAAAATGATGGATTATGTGGGGTACCTCGATTACAAGTCCAGCCATGCAAAATATTGCGGTCTAAATACATAAGACAAGGACTAGTATCCACGAAAGTTGATGTCTACAGCTACGGTATTCTATTAATGGAAACATTTACAAGGAAGAAGCCAACAGATGAAATATTTTCCGACAATTTGACTATGAGGAATTGGGTTTATGAAGCCTCACTCAGTTCAATAGTTCAAGTTGTAGACGCCAATTTGATAGGAAAAGAAGACGAAGATTTCTTGGCAAAGAAGGAATGTGCCTCGTCCATTTTGCATCTGGCCTTGGATTGTTCGGCAAATATTCCTACACAGAGAAAGAGCATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACTTTTCAAACGAATACCGGAAAAGGTCTCATGACAGAGGTAGAAAATTAA

Network for GWHGAAZE015715

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	23	83	4.20E-07
PF13855.7	LRR_8	152	211	3.00E-11
PF13855.7	LRR_8	298	355	6.60E-08
PF07714.18	PK_Tyr_Ser-Thr	397	498	6.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.397
	SRR3591707	mature leaf	0.675
	SRR3591708	Shoot apex	0.089
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.053
	SRR3591711	White flower	0.199
	SRR3591712	Green floral bud	0.026
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.248
	SRR8316896	Juvenile bud stage	0.185
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.076
	SRR8316900	Third green stage	0.115
	SRR8316901	Third green stage	0.058
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.139
	SRR8316903	Complete white stage	0.060
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.057
	SRR6706287	Light intensity 50%	0.113
	SRR6706288	Light intensity 20%	0.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.094
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.036
	CNS0095595	Whole white alabastrum(diploid) 2	0.071
	CNS0095596	Whole white alabastrum(diploid) 3	0.222
	CNS0095597	Whole white alabastrum(diploid) 4	0.090
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.027
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.075
	CNS0095603	Golden flower (diploid) 3	0.028
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.033
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.016
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.016
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.010
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.075
	CRR073301	Leaf 2	0.067
	CRR073302	Leaf 3	0.039
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.048
	CRR073308	Third green 3	0.229
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.014
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.154
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.058
	CRR073319	Tawny withering 2	0.126
	CRR073320	Tawny withering 3	0.452