Gene detail

Detail information of GWHGAAZE015692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	4E-109	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT4G20140.1	5E-89	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	53523827	53536830	-
GWHAAZE00000004	mRNA	53523827	53536830	-
GWHAAZE00000004	exon	53536437	53536830	-
GWHAAZE00000004	exon	53534801	53535166	-
GWHAAZE00000004	exon	53532469	53532831	-
GWHAAZE00000004	exon	53525911	53526963	-
GWHAAZE00000004	exon	53523827	53524176	-
GWHAAZE00000004	CDS	53536437	53536830	-
GWHAAZE00000004	CDS	53534801	53535166	-
GWHAAZE00000004	CDS	53532469	53532831	-
GWHAAZE00000004	CDS	53525911	53526963	-
GWHAAZE00000004	CDS	53523827	53524176	-

Transcript Sequence
>GWHTAAZE015708 ATGACGAGAAATTCTTTCATTTTCACGGTTTCATTGTTGTTTTTGCTAAATGGTTTCTCGTTTTGCTTATATACTAAGGAGAAATTTGCACTTCTTGCCATCAAAACCAATATCATTGACCATTCAGGCATTTTAGCAAACAATTGGTCTGCAATTTCCAACGCTTCAATCTGCACTTGGATTGGTGTTTCCTGTGATTTAAACAACCAATCTGTCATTGCCTTGAATCTGTCCAGCATGGGTCTCACCGGCACTGTCACTCCGGCTATTGGAAACCTCTCGTCCCTCACTTTACTTGACATCAGTTACAATAACTTCTCAGGTTTTGTGCCCGAAGAGTTATCTCACTTGCATCATCTTCAACAATTGCTTTTATCCAACAACAGTTTCACAGGTACAATCCCAGCTTCGTTAGGCAACATTACAAATCTTGAGATATTGGATTTAAGCTTCAATCAGCTTACAGGCCCTGTACCAGCTGCGATATTCAATATTTCTTCATTGAGAGTAATTCACCTCACAGCTAATAATTTATATGGTAGTCTTCCGGTGGATATCTGCAGTCATTATGTTCCTAAACTTGAAAGAATTTTGCTGTCCCTGAATCGTTTCGAGGGGAAATTTCCACCGAATTTATTCAAATGCAGGGAGCTTCAGTATCTTTCATTGTCAGCCAACGAATTTAGTGGCAGCATACCCATTGAAATAGGCAACTTGACCATGCTCGAGAAATTATTTCTTGGCTACAATAATTTAGAAGGTGAAATTCCAGCGGAGATTGGTAATCTCAAACTTTTGGAGTTATTGAGCATACCAGGTAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCTCTTTGAAAATAATCAGTCTCGAAGAAAATAAGTTGACTGGAAGCTTCCCAATGGACATTAATTATAATCTCCCTGTTCTTGAAAAGCTCTATCTGTATGCAAATCAGCTTAAGGGTCAGATTCCATCGTGCTTATGGGATTTCAAAGGACTTCAAATTATATCATTGTACAAAAATAAATTCACAGGGAGCATACCTAAGAAAGTAGGGAACCTTACATTGCTCAAAGTTCTAGATCTTACTGATAACAATTTCACAGGAACATTACCAAGTGAGTTTGGTAAGCTTAATTTGGAAAGTCTCCTTCTTAGACAAAACAGCTTAACCGGCCCTATACCTTTCGAAATCTTCAATATCTCAACAATCATTCGGATTTCTTTTTCATATAATCACTTATCGGGCTATCTTCCAACGAGCTTGGGGCTTTGGACTCCCAATCTTGAATGCCTTTACCTATATGACAATAGGCTCAGTGGATCAATCCCAAGCTCTATCTCGAATGCATCTAAGCTTACCACGATAGAGATGTCTAGTAACTCATTCACTGGCTTTATACCCAGCACAATTGGAAATTTAAGAAATTTGCGAAATCTTTTTGTTGGAGAAAACAATTTAAAGATGGAAGATTGCACTCCTGAATTGAGATTCTTTGATTCTTTGAGTAATTGCAAGAATTTGGTCCATTTATCGATGCCACTAAATCAATTCAATGGAATCCTCCCAGCTTCAGTTGCGAATCTCTCGACTTCTCTTCGCAGTTTTGAAGCATTTGGAAGCAAAATTAAGGGCGAAATTCCAATGGGAATAGGAAACTTGAGTCACTTGTTGACCCTAAGTTTATATAGCAATGAGTTAACTGGGTTCATCCCATCATCGCTCGGAAGATTGAAAAATCTTGAACAATTGTATCTTGAACACAATGATTTAAAAGGTTCCATACCAAATGATCTTTGCCGATTAGAAAGGTTGGGAGACTTATATTTGAGTGATAATAAACTCGACGGACCTATTCCATCATGTTTAGGAGAACTTAGTTCTATGATAAGTCTGTCATTAGGTTCTAATAATTTGACTTCGACAATACCATCAACCTTGTGGAGTCTAAAAGATCTCTTGCACCTAAACTTGTCCACAAATTCTCTTATTGGTAGTTTACCATCAGATATTGGAAATCTGAAGGTGATAACAGAAATGGACTTATCGTTGAATCGTTTTTCGGGTCGTATCCCAAGTACCATTGGGAAAGGCCAAATGCTAACTTTGCTCTCGTTTGCGCATAATGAACTACAAGGATTCATTCCTCAATCATTTGAATATATAAGAGAAGGAATAGTATCCACAAAAGTAGATGTCTACAGCTACGGTATTCTATTGATGGAAACATTCACAAGGAAGAAGCCAATAGATGAAATGTTTTCTGGCAATTTGACTATGAGGAATTGGGTTTATGAAGCATCACTCAGTTCAATACTTCATGTTGTAGATGCCAATTTGATAGGGCAAGAAGATGAAGATTTCTTGCCCAAGAAGGAATGTGCCTCATCCATTTTGCATTTGGCCTTGGATTGTTCGACAAGTATTCCTACACAGAGGATCAGCATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACTTTTCTAACAAATACTGGATAA

Network for GWHGAAZE015692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	66	1.80E-06
PF13855.7	LRR_8	75	129	1.90E-07
PF00560.34	LRR_1	363	384	1.2
PF13855.7	LRR_8	433	493	2.20E-06
PF13855.7	LRR_8	558	597	4.60E-07
PF07714.18	PK_Tyr_Ser-Thr	725	828	9.20E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.164
	SRR3591706	second leaf	1.424
	SRR3591707	mature leaf	2.413
	SRR3591708	Shoot apex	0.154
	SRR3591709	Stem	2.012
	SRR3591710	White floral bud	0.026
	SRR3591711	White flower	0.030
	SRR3591712	Green floral bud	0.271
	SRR3591713	Yellow flower	0.032
SRP173429	SRR8316895	Juvenile bud stage	0.043
	SRR8316896	Juvenile bud stage	0.065
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.035
	SRR8316901	Third green stage	0.025
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.054
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.029
	SRR6706287	Light intensity 50%	0.049
	SRR6706288	Light intensity 20%	0.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.035
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.012
	CNS0095595	Whole white alabastrum(diploid) 2	0.259
	CNS0095596	Whole white alabastrum(diploid) 3	0.140
	CNS0095597	Whole white alabastrum(diploid) 4	0.275
	CNS0095598	Silvery flower (diploied) 1	0.079
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.019
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.063
	CRR073300	Leaf 1	0.125
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.016
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.039
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.309
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.296
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	1.207
	CRR073319	Tawny withering 2	0.936
	CRR073320	Tawny withering 3	0.156