Gene detail

Detail information of GWHGAAZE015666

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099195.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Sesamum indicum]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	3E-99	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT4G20140.1	2E-82	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	52515323	52531847	-
GWHAAZE00000004	mRNA	52515323	52531847	-
GWHAAZE00000004	exon	52531691	52531847	-
GWHAAZE00000004	exon	52530052	52530417	-
GWHAAZE00000004	exon	52526497	52526859	-
GWHAAZE00000004	exon	52517382	52518344	-
GWHAAZE00000004	exon	52515323	52515699	-
GWHAAZE00000004	CDS	52531691	52531847	-
GWHAAZE00000004	CDS	52530052	52530417	-
GWHAAZE00000004	CDS	52526497	52526859	-
GWHAAZE00000004	CDS	52517382	52518344	-
GWHAAZE00000004	CDS	52515323	52515699	-

Transcript Sequence
>GWHTAAZE015682 ATGGGTCTGGCCGGCACTGTCACTCCGGTTATCGAAAACCTCTCGTCCCTCACTTCACTTGACATCAGTTACAATAACTTCTCTGGTTCTTTGCCTGAAGAGTTATCTCATTTGCATCATCTTCAACAATTGCTTTTATCCAACAACAGTTTCACAGGTACAATCCCAGCGTCGTTAGGCAACATTACAAAGCTTGAGATATTGCATTTAAGCTTCAATCAGCTTACACGCTCTGTACCGGCTACCATATTCAACATTTCTTCATTGAAAGAAATTCACCTCACAGCTAATAACTTATATGGTAGTCTTCCGATGGATATCTGTAGCCATTATGTTCCTAAACTAGAAGGAATTTTCCTGTCCCTGAATCGTTTCGAGGGGAAATTTCCAGCGAGTTTATTCAAATGCAGGGAGCTTCAGTCACTTTCATTGTCATTCAATGAATTTAGTGGCAGCATACCCATTGAAATAGGCAACTTGACCATGCTCAAGAGATTATTTCTTGGCCACAACAATTTAGAAGGTGAAATTCCAGAGGAGATTGGTAATCTCAAACTTTTGGAGATATTGAACATACGAAATAGCCTTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCATCTTTGAAAAAAATCGATCTCGAAGAAAATAAACTGGCTGGAAGCTTCCCAATGGACATTCATTATAATCTCCCTGTTCTTGAAGAGCTCTATCTTTATGAAAATCAGCTTAAGGGTCAGATTCCATCGTACTTATGGGATTGCAAAGGACTTAAAATTTTATCAATGTTCGAAAATAAATTCACAGGGAGTATACCTAAGAAAGTTGGGAACCTTACGTCGCTCAAAACTCTAGATCTTTCTCATAATGATTTCACAGGAACATTACCAAGTGAGTTTGGTAAGCTTAATTTGGAAACACTCATTCTTGCTCAGAACAGCTTAACCGGCCTTATACCTTTCGAAATCTTCAATATCTCAACAATCATTCAAATTTTTTTGTCATCAAATCACTTCTCGGGCCATCTTCCATCGAGCATGGGGCTTTGGACTCCCAATCTTGAAGAGCTTAACCTACATGACAATAAGATTAGCGGATCAATTCCAAGCTCTATCTCAAATGCGTCTAAGCTTACCGTGATAGACATGTCTATCAACTCGTTCACTGGCTTTATACCTAACACACTTGGTAATTTAAGAGATTTACGAGAACTATTTTTTGCAGAAAACAATTTGAACGGGGAAGGTTCCACTTCAGAATTGAGATTCTTCGATTCTTTGAGTAATTGCAAGAATTTGGAGCTTTTGGAAATATCTCATAATCAATTTAATGGAATCCTCCCAGCTTCAGTTGCGAATCTCTCAACTTTTCTTCATAGTTTTGACGCATTTAGAAGCAAAATTAAGGGCAAAATTCCAATGGGAATAGGCAACTTGAGCGGCTTATCGGCCTTAATTTTTAATAGCAATGAGTTGTCTGGGTTCATCCCATTAACGCTCAGAAGATTGAAAAATCTTGAACAATTGTATCTTGGAGACAACGATTTGAAAGGATCCATACCAAATGATCTTTGTCAGTTAGAAAGGTTGGGAGAATTATATTTGAATGATAATAAACTCAATGGACCTATACCGTCATGTTTAGGAGAACTTAGTTCTATGATAAGGCTCTCATTAGGTTCTAATAATTTGACTTCAACAATACCATCAACCTTGTGGAGCCTAGAAAATCTCTTATACTTAAACTTCTCCACAAATTCTCTTACCGGTATTTTACCATCAGATATTGGAAATCTAAAGGTGATAACAGAAATGGACTTATCGTTGAATCGTTTTTCGGGTCAATATGGAAGAGAAGGAATAGTATCCACGAAAGGAGATGTCTATAGCTATGGTATTCTATTAATGGAAACATTCACAAGGAAGAAGCCAACAGATGAAATGTTTTCTGACAATTTGACTATGAGGAATTGGGTTTATGAAGCATCACTCGATTCAATAGTTCAAGTTGTAGATGCCAATTTGATAGGACAAGAAGATGAAGATTTCATGCCCAAGAAGAAATGTGCTTCATCCATTTTGCATTTGGCCTTGGATTGTTCAAAAAGTATTCCTACACAGAGGATCAGCATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACTTTCCTAACGAACACTGGATATAGTCTCATGACGGAGGTAGCAAATTAA

Network for GWHGAAZE015666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00560.34	LRR_1	16	38	1.2
PF13855.7	LRR_8	40	99	1.60E-06
PF00560.34	LRR_1	283	305	0.081
PF13855.7	LRR_8	354	414	2.40E-07
PF13855.7	LRR_8	558	613	2.30E-06
PF07714.18	PK_Tyr_Ser-Thr	621	719	2.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.024
	SRR3591706	second leaf	1.336
	SRR3591707	mature leaf	2.569
	SRR3591708	Shoot apex	0.316
	SRR3591709	Stem	0.242
	SRR3591710	White floral bud	0.466
	SRR3591711	White flower	0.230
	SRR3591712	Green floral bud	0.045
	SRR3591713	Yellow flower	0.195
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.036
	SRR8316897	Juvenile bud stage	0.012
	SRR8316894	Third green stage	0.008
	SRR8316900	Third green stage	0.026
	SRR8316901	Third green stage	0.006
	SRR8316898	Complete white stage	0.026
	SRR8316899	Complete white stage	0.351
	SRR8316903	Complete white stage	0.141
	SRR8316902	Silver flowering stage	0.049
	SRR8316904	Silver flowering stage	0.027
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.066
SRP132670	SRR6706286	Control	0.006
	SRR6706287	Light intensity 50%	0.006
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.038
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.086
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.034
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.048
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.006
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.033
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.058
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.101
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.089
	CRR073316	Gold flowering 2	0.126
	CRR073317	Gold flowering 3	0.072
	CRR073318	Tawny withering 1	0.503
	CRR073319	Tawny withering 2	0.485
	CRR073320	Tawny withering 3	0.492