Gene detail

Detail information of GWHGAAZE015606

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP17874.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q38869\|CDPK4_ARATH	Calcium-dependent protein kinase 4
trEMBL	tr\|A0A068VBD3\|A0A068VBD3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_186 {ECO:0000313\|EMBL:CDP17874.1}
TAIR10	AT4G09570.1	calcium-dependent protein kinase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	50281415	50287890	-
GWHAAZE00000004	mRNA	50281415	50287890	-
GWHAAZE00000004	exon	50287764	50287890	-
GWHAAZE00000004	exon	50286749	50287144	-
GWHAAZE00000004	exon	50285008	50285151	-
GWHAAZE00000004	exon	50284409	50284561	-
GWHAAZE00000004	exon	50283955	50284070	-
GWHAAZE00000004	exon	50283294	50283461	-
GWHAAZE00000004	exon	50282255	50282479	-
GWHAAZE00000004	exon	50281415	50281564	-
GWHAAZE00000004	CDS	50287764	50287890	-
GWHAAZE00000004	CDS	50286749	50287144	-
GWHAAZE00000004	CDS	50285008	50285151	-
GWHAAZE00000004	CDS	50284409	50284561	-
GWHAAZE00000004	CDS	50283955	50284070	-
GWHAAZE00000004	CDS	50283294	50283461	-
GWHAAZE00000004	CDS	50282255	50282479	-
GWHAAZE00000004	CDS	50281415	50281564	-

Transcript Sequence
>GWHTAAZE015622 ATGACAAAACCAACCTCATCAATTCTCCCTTATCAAACCCCACGCTTAAGGGATCACTACCTGCTTGGCAAGAAGCTGGGTCAAGGCCAATTCGGCACTACCTATCTCTGCACCGAGAAATCTACAGGTATCGATTACGCCTGCAAATCCATCGCCAAGCGCAAGCTACTCTGCCGAGACGATTATGAGGATGTGTGGAGAGAGATTCAGATAATGCACCATTTGTCCGAGCACCCACACGTTGTGCGGATCAAGGGGACATATGAGGACAACGTGTTTGTGCATCTTGTAATGGAATTATGTGGCGGTGGGGAGTTGTTCGATCGGATTGTTCAGAAAGGGCAATACAGCGAACACCAGGCAGCACAATTGATGAAGGTCATTGTTGGTGTTGTAGAAGCTTGCCACTCGCTTGGGGTTATGCATAGGGATCTGAAACCCGAGAATTTCTTGTTTGATAGTCCCGCGGAGGATGCTACCCTTAAGGCTATCGATTTTGGATTGTCTGTATTCTATAAGCCTGGGCAGTACCTTTCCGATGTTGTTGGAAGCCCCTATTATGTCGCACCTGAAGTTTTGCATAAATATTATGGACCTGAATCTGATGTATGGAGTGCCGGTGTTATACTGTACATCTTACTATGTGGGGTTCCACCTTTTTGGGCAGAAACGGACTCCGGTATCTTCAGACAAATTTTGAAAGGACACATAGATTTTGTATCTGAACCATGGCCTCACATTTCAGAAAGTGCAAAGGATTTGATAAGGAAGATGCTTGATAGAAACCCGAGGCAAAGAATATCTGCTCATGAAGTCCTATGTCACCCATGGATCGTGGATGACAGAGTTGCCCCAGACAAACCTTTGGACTCTGCAGTTTTGTCACGTTTGAAGCAGTTCTCAGCTATGAACAAGCTTAAAAAGATGGCTCTGCGTGTAATAGCAGAAAGTCTTTCAGAAGAAGAGATTGGTGGCTTGAAGCAGTTGTTCAAGATGATTGACACAGACAACAGCGGTGCAATTACATTCGAGGAACTGAAACAGGGTTTAAAAAGAGTAGGATCTAATCTGATGGAGTCCGAGATCAAGGATCTTATGAATGCGGCTGATATTGATAATAGTGGCACAATTGACTACGGTGAGTTTCTTGCCGCTACCTTGCACTTGAATAAGATGGAGAGAGAAGAGAATTTGCTAGCAGCCTTCTCTTTTTTTGACAAGGATGGCAGTGGCTACATAACCATCGATGAGCTTCAACAAGCTTGCAAAGATTTTGGCTTAAGCGAAGTTCAATGGGAGGATATAATCAAAGAAATAGATCAAGACAATGATGGACGTATAGACTACGGGGAATTTGCTGCAATGATGAGAAAAGGCGATGGAGGGGTAGGAAGCAGAACCATGAGAGGCAATTTGAATTTTAAATTGGAAGAAGCCATTGAAGCCGCCGAGAAAATGGCGAAAACGGAAAATAATTGA

Network for GWHGAAZE015606

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	22	278	4.20E-75
PF13499.7	EF-hand_7	326	386	6.00E-11
PF13499.7	EF-hand_7	396	457	4.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005509	molecular_function	calcium ion binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.584
	SRR3591706	second leaf	0.125
	SRR3591707	mature leaf	0.611
	SRR3591708	Shoot apex	0.027
	SRR3591709	Stem	0.045
	SRR3591710	White floral bud	5.678
	SRR3591711	White flower	1.028
	SRR3591712	Green floral bud	12.876
	SRR3591713	Yellow flower	6.970
SRP173429	SRR8316895	Juvenile bud stage	3.483
	SRR8316896	Juvenile bud stage	17.328
	SRR8316897	Juvenile bud stage	12.909
	SRR8316894	Third green stage	7.905
	SRR8316900	Third green stage	33.376
	SRR8316901	Third green stage	31.788
	SRR8316898	Complete white stage	1.255
	SRR8316899	Complete white stage	1.037
	SRR8316903	Complete white stage	2.684
	SRR8316902	Silver flowering stage	2.210
	SRR8316904	Silver flowering stage	2.698
	SRR8316905	Silver flowering stage	1.336
	SRR8316906	Gold flowering stage	8.282
	SRR8316907	Gold flowering stage	3.651
	SRR8316908	Gold flowering stage	14.230
SRP132670	SRR6706286	Control	14.047
	SRR6706287	Light intensity 50%	14.215
	SRR6706288	Light intensity 20%	12.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.865
	CNS0095593	Slightly white alabastrum(diploid) 2	13.869
	CNS0095594	Slightly white alabastrum(diploid) 3	26.182
	CNS0095595	Whole white alabastrum(diploid) 2	25.437
	CNS0095596	Whole white alabastrum(diploid) 3	30.282
	CNS0095597	Whole white alabastrum(diploid) 4	30.626
	CNS0095598	Silvery flower (diploied) 1	1.938
	CNS0095599	Silvery flower (diploied) 2	2.939
	CNS0095600	Silvery flower (diploied) 3	1.687
	CNS0095601	Golden flower (diploid) 1	3.564
	CNS0095602	Golden flower (diploid) 2	4.136
	CNS0095603	Golden flower (diploid) 3	3.554
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.772
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.462
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.396
	CNS0095607	Whole white alabastrum(tetraploid) 1	93.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	100.597
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.161
	CNS0095610	Silvery flower (tetraploid) 1	2.409
	CNS0095611	Silvery flower (tetraploid) 2	2.011
	CNS0095612	Silvery flower (tetraploid) 3	4.759
	CNS0095613	Golden flower (tetraploid) 1	9.909
	CNS0095614	Golden flower (tetraploid) 2	5.192
	CNS0095615	Golden flower (tetraploid) 3	31.602
CRA001975	CRR073297	Stem 1	5.874
	CRR073298	Stem 2	9.301
	CRR073299	Stem 3	3.631
	CRR073300	Leaf 1	20.599
	CRR073301	Leaf 2	15.994
	CRR073302	Leaf 3	12.207
	CRR073303	Juvenile bud 1	12.833
	CRR073304	Juvenile bud 2	16.452
	CRR073305	Juvenile bud 3	0.787
	CRR073306	Third green 1	7.734
	CRR073307	Third green 2	5.801
	CRR073308	Third green 3	6.528
	CRR073309	Second white 1	1.367
	CRR073310	Second white 2	3.483
	CRR073311	Second white 3	4.888
	CRR073312	Silver flowering 1	9.723
	CRR073313	Silver flowering 2	12.132
	CRR073314	Silver flowering 3	4.995
	CRR073315	Gold flowering 1	6.344
	CRR073316	Gold flowering 2	7.799
	CRR073317	Gold flowering 3	3.865
	CRR073318	Tawny withering 1	4.554
	CRR073319	Tawny withering 2	4.304
	CRR073320	Tawny withering 3	2.942