Detail information of GWHGAAZE015592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004241824.19.87564E-41PREDICTED: 50S ribosomal protein L21, chloroplastic [Solanum lycopersicum]
Swissprottr|P51412|RK21_ARATH4E-3350S ribosomal protein L21, chloroplastic (Precursor)
trEMBLtr|K4C7G8|K4C7G8_SOLLC4E-41Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g065390.2.1}
TAIR10AT1G35680.13E-26Ribosomal protein L21

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene4974986449754889+
GWHAAZE00000004mRNA4974986449754889+
GWHAAZE00000004exon4974986449750046+
GWHAAZE00000004exon4975248749752567+
GWHAAZE00000004exon4975479749754889+
GWHAAZE00000004CDS4974986449750046+
GWHAAZE00000004CDS4975248749752567+
GWHAAZE00000004CDS4975479749754889+
Transcript Sequence

Network for GWHGAAZE015592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00829.22Ribosomal_L21p571131.40E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02888RP-L21, MRPL21, rplU Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0005840cellular_componentribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.270
SRR3591706second leaf51.026
SRR3591707mature leaf17.316
SRR3591708Shoot apex49.108
SRR3591709Stem8.480
SRR3591710White floral bud9.267
SRR3591711White flower14.787
SRR3591712Green floral bud10.310
SRR3591713Yellow flower19.952
SRP173429 SRR8316895Juvenile bud stage 13.311
SRR8316896Juvenile bud stage 13.322
SRR8316897Juvenile bud stage 12.707
SRR8316894Third green stage 6.329
SRR8316900Third green stage 20.171
SRR8316901Third green stage 11.877
SRR8316898Complete white stage 4.863
SRR8316899Complete white stage 10.365
SRR8316903Complete white stage 3.292
SRR8316902Silver flowering stage11.001
SRR8316904Silver flowering stage19.033
SRR8316905Silver flowering stage5.494
SRR8316906Gold flowering stage 25.455
SRR8316907Gold flowering stage 18.421
SRR8316908Gold flowering stage 26.108
SRP132670SRR6706286Control19.910
SRR6706287Light intensity 50%18.126
SRR6706288Light intensity 20%21.520
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.821
CNS0095593Slightly white alabastrum(diploid) 27.261
CNS0095594Slightly white alabastrum(diploid) 35.549
CNS0095595Whole white alabastrum(diploid) 26.558
CNS0095596Whole white alabastrum(diploid) 37.818
CNS0095597Whole white alabastrum(diploid) 45.234
CNS0095598Silvery flower (diploied) 116.846
CNS0095599Silvery flower (diploied) 221.405
CNS0095600Silvery flower (diploied) 330.026
CNS0095601Golden flower (diploid) 127.079
CNS0095602Golden flower (diploid) 234.492
CNS0095603Golden flower (diploid) 331.728
CNS0095604Slightly white alabastrum(tetraploid) 110.610
CNS0095605Slightly white alabastrum(tetraploid) 210.637
CNS0095606Slightly white alabastrum(tetraploid) 313.023
CNS0095607Whole white alabastrum(tetraploid) 12.462
CNS0095608Whole white alabastrum(tetraploid) 22.915
CNS0095609Whole white alabastrum(tetraploid) 38.882
CNS0095610Silvery flower (tetraploid) 17.652
CNS0095611Silvery flower (tetraploid) 214.306
CNS0095612Silvery flower (tetraploid) 322.546
CNS0095613Golden flower (tetraploid) 18.652
CNS0095614Golden flower (tetraploid) 215.107
CNS0095615Golden flower (tetraploid) 335.319
CRA001975CRR073297Stem 130.816
CRR073298Stem 232.848
CRR073299Stem 343.118
CRR073300Leaf 117.271
CRR073301Leaf 224.840
CRR073302Leaf 330.295
CRR073303Juvenile bud 119.528
CRR073304Juvenile bud 220.676
CRR073305Juvenile bud 320.029
CRR073306Third green 17.356
CRR073307Third green 26.488
CRR073308Third green 37.572
CRR073309Second white 136.117
CRR073310Second white 225.464
CRR073311Second white 318.932
CRR073312Silver flowering 128.656
CRR073313Silver flowering 237.094
CRR073314Silver flowering 315.832
CRR073315Gold flowering 184.622
CRR073316Gold flowering 2104.470
CRR073317Gold flowering 383.906
CRR073318Tawny withering 119.168
CRR073319Tawny withering 27.758
CRR073320Tawny withering 318.126