Gene detail

Detail information of GWHGAAZE015581

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009628933.1	0	PREDICTED: protein argonaute 2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SHF3\|AGO2_ARATH	0	Protein argonaute 2
trEMBL	tr\|A0A067JWB9\|A0A067JWB9_JATCU	0	Protein argonaute {ECO:0000256\|RuleBase:RU361178}
TAIR10	AT1G31280.1	4E-172	Argonaute family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	49038163	49041472	+
GWHAAZE00000004	mRNA	49038163	49041472	+
GWHAAZE00000004	exon	49038163	49038765	+
GWHAAZE00000004	exon	49039292	49039878	+
GWHAAZE00000004	exon	49040668	49041472	+
GWHAAZE00000004	CDS	49038163	49038765	+
GWHAAZE00000004	CDS	49039292	49039878	+
GWHAAZE00000004	CDS	49040668	49041472	+

Transcript Sequence
>GWHTAAZE015597 ATACAATCGCTGAATGTATCTGAAAGTCGGCCTCGATCTCTTCAAGAATACTCAAAGGATAGAGTTCTACCAATAAAACGGCCCAACAGTGGTGGCAAACTCTCAGTGAGGAGAACAAAGCTTCTTGTTAACCATTTTCTTGTCAAATTCAATCCTGAGACCATCATAATGCACTACGACATTGATATTAAGGCAGATAGGCCTTCGAGGGGACGGTTTTCTAGACCAATACCGAAATCTGATCTCCTTTTGATCAGGCGAGAGCTTTTCGCTAGAGACCCTACACATTTCCCCATGAGTATGACTGCATATGACGGCAAGAAGAATATTTTCAGCGCAGTTGAGCTTCCTACTGGGGAATTTCAGGTGAACTTGTCTGACGGAGAGGATTCGATGGAGCGGTCCTATACGTTTACTATTCAGTTAGTGAATGAGCTGAGGCTTGCAAAGCTGAATGAATACTTGAGGGCGGAAATCTTGCACATCCCTCGTGATATACTGCAAGGGATGGATTTGGTTATGAAGGACCATCCTTCAAGGTCTAGGATCTGTACTGGTCGAAGTACTTACTCCAAGAACTACAGACAACAAGATGACTTGCGGGGTGGGATTGCTGCATTTAGGGGCTTCCAACAAAGCTTGAAGCCAACATCTCAAGGACTAGCATTGTGTTTGGATTACTCGGTTATTGCATTTCGCAAGCGCTTGCCTGTTATAGACTTTCTTAAGGAGCATGTGCGGGGATTTGAACCTGTAAGTGATATAGGGAGGTTGCAAAGACAAGTAATGACTGCATTAGTGGGCTTGAAAGTGACGGTGACTCACCGTCTTACTAAACAGAAGTTCACTATTGCGAGATTGACGAACGAAAATACCAGAGATCTTGGATTCACCCTCGAAGATCGTGAGGGCAATGAGCTGCCGCGAAATATTAGCATGGTCCAGTATTTCAGGGAGAAATATGGGAGGGAAATAGAATACCCGGATATTCCTTGTTTGGATGTGGGCAAGAACAGGAGGACAAATTACATACCGATGGAGTTCTGCGTGTTGGTTGAGGGACAGAGGTTTCCCAAAGAACAATTGGATAAAAATGCAGGGATTTTGTTGAAGAGCATATCATTGGCTCCTGCAAGAGACAGAAAGAATTTTATATCTGAAGTGCTGCGGGCTGAGGATGGACCTTGTGGGGGTGAGGTAATTCGTAATTTTGACATTGGAGTTGACCAAAACATGACGAGTGTTGTTGGTCGTGTCATTGGGGCACCTGAGTTGAAGCTCGGCAAAGGGAACCTCGTAAGAGTTGACAAGGACAAGTGTCAGTGGAACCTTGTTAATAAATCTGTTGTGGATGGCAGATCAGTTGATCGATGGGCCTTGATTGATTTCACTTGTGCTGAACGTGCTGAACGTTACAAGAGGTTGGATCCCAATAGATTTATCCCCAATCTAATGGGTCGATGTGGTAAACTGGGAATTCGAATGGCGGAACCTCTCGTGGTCCATTATTATGACATGCAGGAGTTCAATAATGTCAATAGGCTCGAAGGAGTCCTCCAAGGTGTAATTGATGAGGCCAAAAGCACAGTTGAAGGTCGATTGCAGATCATTATTTGCGTTATGGCGGGAAAACATGATGGTTACAAGTACTTGAAATGGGTTTCCGAGACGAAAATCGGCGTTATAACACAATGTTGCTTGTCTGAACAAGCCAACAAATGTCAAGATCAATATCTTGCGAACCTTGGTCTCAAAATCAATGCCAAGCTTGGTGGAAGTAATGCAGAGCTCAACGAGCCGCTCCAGCTCCCCCGGATTGTCGGTCAAGATCACGTGATGTTTGTGGGGGTAGATCACCCAAGCCCAATGAACAAATCTTGCCAGTCCATTGCGGCCGTTGTTGCTACAACCAATTGGCTCTTGCAGAATCGCATGCCCGTGTTCGCTGCGGCACCGCAAGGAAAAGATTGTGTATTTTGGGACTATGGTTCTTGA

Network for GWHGAAZE015581

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16486.6	ArgoN	37	174	6.60E-22
PF08699.11	ArgoL1	186	234	2.70E-10
PF02170.23	PAZ	240	363	2.50E-20
PF02171.18	Piwi	536	638	3.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11593	ELF2C, AGO	Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.860
	SRR3591706	second leaf	4.454
	SRR3591707	mature leaf	4.132
	SRR3591708	Shoot apex	9.209
	SRR3591709	Stem	19.198
	SRR3591710	White floral bud	4.891
	SRR3591711	White flower	5.125
	SRR3591712	Green floral bud	6.572
	SRR3591713	Yellow flower	0.931
SRP173429	SRR8316895	Juvenile bud stage	10.127
	SRR8316896	Juvenile bud stage	14.836
	SRR8316897	Juvenile bud stage	10.091
	SRR8316894	Third green stage	1.639
	SRR8316900	Third green stage	4.049
	SRR8316901	Third green stage	5.872
	SRR8316898	Complete white stage	1.097
	SRR8316899	Complete white stage	11.780
	SRR8316903	Complete white stage	1.024
	SRR8316902	Silver flowering stage	1.040
	SRR8316904	Silver flowering stage	1.313
	SRR8316905	Silver flowering stage	0.649
	SRR8316906	Gold flowering stage	1.030
	SRR8316907	Gold flowering stage	1.273
	SRR8316908	Gold flowering stage	1.049
SRP132670	SRR6706286	Control	3.122
	SRR6706287	Light intensity 50%	2.838
	SRR6706288	Light intensity 20%	2.814
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.195
	CNS0095593	Slightly white alabastrum(diploid) 2	2.648
	CNS0095594	Slightly white alabastrum(diploid) 3	1.970
	CNS0095595	Whole white alabastrum(diploid) 2	2.000
	CNS0095596	Whole white alabastrum(diploid) 3	1.047
	CNS0095597	Whole white alabastrum(diploid) 4	1.157
	CNS0095598	Silvery flower (diploied) 1	2.025
	CNS0095599	Silvery flower (diploied) 2	10.627
	CNS0095600	Silvery flower (diploied) 3	8.462
	CNS0095601	Golden flower (diploid) 1	13.438
	CNS0095602	Golden flower (diploid) 2	11.476
	CNS0095603	Golden flower (diploid) 3	10.663
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.583
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.283
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.675
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.029
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.338
	CNS0095610	Silvery flower (tetraploid) 1	1.369
	CNS0095611	Silvery flower (tetraploid) 2	1.731
	CNS0095612	Silvery flower (tetraploid) 3	0.939
	CNS0095613	Golden flower (tetraploid) 1	0.385
	CNS0095614	Golden flower (tetraploid) 2	1.003
	CNS0095615	Golden flower (tetraploid) 3	0.470
CRA001975	CRR073297	Stem 1	1.776
	CRR073298	Stem 2	1.797
	CRR073299	Stem 3	2.214
	CRR073300	Leaf 1	2.727
	CRR073301	Leaf 2	3.354
	CRR073302	Leaf 3	2.113
	CRR073303	Juvenile bud 1	1.448
	CRR073304	Juvenile bud 2	1.873
	CRR073305	Juvenile bud 3	6.579
	CRR073306	Third green 1	0.978
	CRR073307	Third green 2	0.458
	CRR073308	Third green 3	0.412
	CRR073309	Second white 1	0.562
	CRR073310	Second white 2	0.469
	CRR073311	Second white 3	0.280
	CRR073312	Silver flowering 1	0.689
	CRR073313	Silver flowering 2	0.439
	CRR073314	Silver flowering 3	0.225
	CRR073315	Gold flowering 1	1.043
	CRR073316	Gold flowering 2	1.182
	CRR073317	Gold flowering 3	1.368
	CRR073318	Tawny withering 1	4.691
	CRR073319	Tawny withering 2	4.642
	CRR073320	Tawny withering 3	5.289