Gene detail

Detail information of GWHGAAZE015555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN27407.1	2.43623E-95	Putative receptor-like protein kinase [Glycine soja]
Swissprot	tr\|Q94C25\|Y5005_ARATH	1E-64	Probable receptor-like protein kinase At5g20050 (Precursor)
trEMBL	tr\|D7TBX3\|D7TBX3_VITVI	1E-83	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28158.3}
TAIR10	AT5G20050.1	2E-42	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	47024190	47025551	-
GWHAAZE00000004	mRNA	47024190	47025551	-
GWHAAZE00000004	exon	47024190	47024638	-
GWHAAZE00000004	exon	47025011	47025551	-
GWHAAZE00000004	CDS	47025011	47025551	-
GWHAAZE00000004	CDS	47024190	47024638	-

Transcript Sequence
>GWHTAAZE015571 ATGGAAGAAAAGAAAACCCACATAATCGCCGTTTCATCGGTCGCAATCCTAATCATCGTCATCGTAATCGCCCGCCTCACCATAAAACTCACCAGCACCTTCTTCGTCATCGCCGGCGCCGGAGTCGCTGCCATCGTCGCAATCATCGCCTTCCTCGTAATCAAATACCGACTCGATCGCCGGCGAAGACAATTCGAGAATAGAATACTTTCCGAAGGAAAAGAACTCAGGATCGAGTATAGTTTCCTCCGTAAAGTCGCCGGAGTTCCGACAAAGTTCCGGTACAGCGAGCTTGAAGTAGCGACCGACAACTTTCAGTCAGTCATCGGCCGCGGAGCCTCAGCGTCAGTGTTCAAAGGAATACTTAGTGACGGCACTGCAGTGGCCGTGAAGCGGATTGAAGCAGAAGATCGCGGCGAAAAGGAATTCAGATCCGAAGTGGCTGCTATAGCAAGCGTGCAGCACGTAAATCTCGTCCGCTTGATCGGATACTGCTGCGTGCCGAGACTTAGATTCATTGTTTATGAATTTGTTCAGAGAGGGAGGAGAAATGTCTGCGTGATTGGCGGGGATGATGGCGACATCTCGAAGAGGAAATTTCAGTATTTCCCTAAAATTGTTTGCGAGAAATTAAGAGAAGGGAGGATAATGGAAGTGGTGGATGAGAGGCTAATGGGAGATAATAATATTGATGAGAGAGAGGTGAGGAAATTGGTATGTGTGGCTTTGTGGTGTATACAAGAGAAGGCTAGGCTTAGGCCTAGCATGGCGAGAGTGGTGGAGATGCTTGAGAGCCGGGCGGCAGTGGAAGAGCCGCCGGTGACTAAAATGATAATAGTTGATCTTTTATCCATCGACGAAGATCCGATTCCGGGTCATCATAGAAGAGTTGCAGCCATGGCATCACCTGAATTGGATAGTAAAGTTCCTCATTCATCTAGATTTTCTTTTTCTTTGTCCATGTCCTTGTCCATGCTTACAGGCAGATAA

Network for GWHGAAZE015555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	106	183	1.30E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_SD-2b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.554
	SRR3591706	second leaf	8.636
	SRR3591707	mature leaf	9.352
	SRR3591708	Shoot apex	15.034
	SRR3591709	Stem	13.812
	SRR3591710	White floral bud	16.197
	SRR3591711	White flower	23.098
	SRR3591712	Green floral bud	10.830
	SRR3591713	Yellow flower	16.633
SRP173429	SRR8316895	Juvenile bud stage	5.884
	SRR8316896	Juvenile bud stage	3.392
	SRR8316897	Juvenile bud stage	5.857
	SRR8316894	Third green stage	3.931
	SRR8316900	Third green stage	6.817
	SRR8316901	Third green stage	7.971
	SRR8316898	Complete white stage	2.223
	SRR8316899	Complete white stage	14.817
	SRR8316903	Complete white stage	3.456
	SRR8316902	Silver flowering stage	6.888
	SRR8316904	Silver flowering stage	6.456
	SRR8316905	Silver flowering stage	4.252
	SRR8316906	Gold flowering stage	21.470
	SRR8316907	Gold flowering stage	25.435
	SRR8316908	Gold flowering stage	24.831
SRP132670	SRR6706286	Control	5.698
	SRR6706287	Light intensity 50%	7.141
	SRR6706288	Light intensity 20%	5.523
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.627
	CNS0095593	Slightly white alabastrum(diploid) 2	5.249
	CNS0095594	Slightly white alabastrum(diploid) 3	6.841
	CNS0095595	Whole white alabastrum(diploid) 2	4.762
	CNS0095596	Whole white alabastrum(diploid) 3	0.769
	CNS0095597	Whole white alabastrum(diploid) 4	5.733
	CNS0095598	Silvery flower (diploied) 1	15.243
	CNS0095599	Silvery flower (diploied) 2	7.993
	CNS0095600	Silvery flower (diploied) 3	18.956
	CNS0095601	Golden flower (diploid) 1	15.796
	CNS0095602	Golden flower (diploid) 2	14.888
	CNS0095603	Golden flower (diploid) 3	16.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.041
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.609
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.923
	CNS0095610	Silvery flower (tetraploid) 1	19.456
	CNS0095611	Silvery flower (tetraploid) 2	16.091
	CNS0095612	Silvery flower (tetraploid) 3	16.394
	CNS0095613	Golden flower (tetraploid) 1	13.738
	CNS0095614	Golden flower (tetraploid) 2	15.121
	CNS0095615	Golden flower (tetraploid) 3	20.738
CRA001975	CRR073297	Stem 1	2.144
	CRR073298	Stem 2	4.238
	CRR073299	Stem 3	2.357
	CRR073300	Leaf 1	9.872
	CRR073301	Leaf 2	8.399
	CRR073302	Leaf 3	5.648
	CRR073303	Juvenile bud 1	8.053
	CRR073304	Juvenile bud 2	15.395
	CRR073305	Juvenile bud 3	13.714
	CRR073306	Third green 1	35.818
	CRR073307	Third green 2	29.969
	CRR073308	Third green 3	37.265
	CRR073309	Second white 1	43.870
	CRR073310	Second white 2	48.048
	CRR073311	Second white 3	43.660
	CRR073312	Silver flowering 1	69.527
	CRR073313	Silver flowering 2	50.801
	CRR073314	Silver flowering 3	36.445
	CRR073315	Gold flowering 1	19.986
	CRR073316	Gold flowering 2	21.006
	CRR073317	Gold flowering 3	16.318
	CRR073318	Tawny withering 1	6.175
	CRR073319	Tawny withering 2	13.642
	CRR073320	Tawny withering 3	3.009