Detail information of GWHGAAZE015553


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010265332.14.42135E-15PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Nelumbo nucifera]
trEMBLtr|A0A059D2K8|A0A059D2K8_EUCGR1E-14Uncharacterized protein {ECO:0000313|EMBL:KCW84671.1}
TAIR10AT1G06790.12E-12RNA polymerase Rpb7 N-terminal domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene4694245146943103-
GWHAAZE00000004mRNA4694245146943103-
GWHAAZE00000004exon4694245146942486-
GWHAAZE00000004exon4694281246942958-
GWHAAZE00000004exon4694306246943103-
GWHAAZE00000004CDS4694306246943103-
GWHAAZE00000004CDS4694281246942958-
GWHAAZE00000004CDS4694245146942486-
Transcript Sequence

Network for GWHGAAZE015553

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03022RPC8, POLR3H RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.548
SRR3591706second leaf15.088
SRR3591707mature leaf14.522
SRR3591708Shoot apex23.581
SRR3591709Stem19.986
SRR3591710White floral bud17.376
SRR3591711White flower24.308
SRR3591712Green floral bud20.393
SRR3591713Yellow flower24.196
SRP173429 SRR8316895Juvenile bud stage 18.620
SRR8316896Juvenile bud stage 21.097
SRR8316897Juvenile bud stage 9.502
SRR8316894Third green stage 8.261
SRR8316900Third green stage 22.601
SRR8316901Third green stage 21.218
SRR8316898Complete white stage 12.146
SRR8316899Complete white stage 39.652
SRR8316903Complete white stage 16.294
SRR8316902Silver flowering stage17.067
SRR8316904Silver flowering stage14.876
SRR8316905Silver flowering stage8.545
SRR8316906Gold flowering stage 28.291
SRR8316907Gold flowering stage 25.929
SRR8316908Gold flowering stage 20.044
SRP132670SRR6706286Control13.854
SRR6706287Light intensity 50%13.632
SRR6706288Light intensity 20%15.216
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.723
CNS0095593Slightly white alabastrum(diploid) 229.146
CNS0095594Slightly white alabastrum(diploid) 320.908
CNS0095595Whole white alabastrum(diploid) 228.368
CNS0095596Whole white alabastrum(diploid) 325.641
CNS0095597Whole white alabastrum(diploid) 422.288
CNS0095598Silvery flower (diploied) 123.699
CNS0095599Silvery flower (diploied) 224.063
CNS0095600Silvery flower (diploied) 321.635
CNS0095601Golden flower (diploid) 121.459
CNS0095602Golden flower (diploid) 215.752
CNS0095603Golden flower (diploid) 320.499
CNS0095604Slightly white alabastrum(tetraploid) 124.652
CNS0095605Slightly white alabastrum(tetraploid) 228.059
CNS0095606Slightly white alabastrum(tetraploid) 340.568
CNS0095607Whole white alabastrum(tetraploid) 123.679
CNS0095608Whole white alabastrum(tetraploid) 218.880
CNS0095609Whole white alabastrum(tetraploid) 330.108
CNS0095610Silvery flower (tetraploid) 129.956
CNS0095611Silvery flower (tetraploid) 227.477
CNS0095612Silvery flower (tetraploid) 332.541
CNS0095613Golden flower (tetraploid) 125.643
CNS0095614Golden flower (tetraploid) 228.543
CNS0095615Golden flower (tetraploid) 320.860
CRA001975CRR073297Stem 118.113
CRR073298Stem 222.371
CRR073299Stem 316.386
CRR073300Leaf 119.161
CRR073301Leaf 222.248
CRR073302Leaf 320.682
CRR073303Juvenile bud 120.664
CRR073304Juvenile bud 216.245
CRR073305Juvenile bud 316.781
CRR073306Third green 16.288
CRR073307Third green 27.032
CRR073308Third green 39.042
CRR073309Second white 19.924
CRR073310Second white 211.149
CRR073311Second white 312.132
CRR073312Silver flowering 110.260
CRR073313Silver flowering 216.793
CRR073314Silver flowering 311.230
CRR073315Gold flowering 18.725
CRR073316Gold flowering 212.610
CRR073317Gold flowering 37.940
CRR073318Tawny withering 113.817
CRR073319Tawny withering 215.930
CRR073320Tawny withering 318.879