Gene detail

Detail information of GWHGAAZE015539

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006340244.1	5.458E-119	PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q9LT81\|C3H39_ARATH	5E-75	Zinc finger CCCH domain-containing protein 39
trEMBL	tr\|M1CEA9\|M1CEA9_SOLTU	2E-119	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400065585}
TAIR10	AT3G19360.1	4E-62	Zinc finger (CCCH-type) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	46094463	46098045	+
GWHAAZE00000004	mRNA	46094463	46098045	+
GWHAAZE00000004	exon	46094463	46095288	+
GWHAAZE00000004	exon	46097798	46098045	+
GWHAAZE00000004	CDS	46094463	46095288	+
GWHAAZE00000004	CDS	46097798	46098045	+

Transcript Sequence
>GWHTAAZE015555 GTTGTTTTCAATTATACTGGTATCTCTATGAGTTTTCCGGATCCTCCACCACCACCACTTCCCTTTATGCCACCACCGCTATTCCATGGTGGCGATGGTGGTTTCTGGCCTCAAATTCCGATGAACAATGAACATCCTGACTCACATATACAGCAGTTGGATCAAGCACCTCCCTTCAAAAGGCCAAAAAATTCCGAAACTAATCTGCCCAATAGTTCAAATTACCCGATGATGAACCCGCTAGCTAATCCTATGGTGAATAAATCAAGTAGCCATGTGCTGATGAACCCATCACTGAATAAAGGAACTTGCCATATATTTTACAAGACCCGAATTTGCACGAGGTTCATGGAAGGCAATTGCCGGAATGGGGAGAATTGTACATTTGCTCATGGTCATCAAGATTTGCGCGAACCCCCTCCCAATTGGCAACAACTTGTCCAAAAAATGGATAAAGGACCGGCAGGGGATTGGAACGACGATAATAGAATAATACATAGGATGAAGATATGTAGGAAGTTCTATAATGGAGAAGAGTGTCCATATGGGGAAAAGTGCAACTTTCTTCATGAAAGTCCGTTGAAATTTAGGACCGATATAGCAATGTCGAGGGAGAGCTCTGCAATAAGCATTGGAACAGTGGGGCCTGTTGTGGAGCAGAACGATGCTAGTGATCAGCAAACTGAATTCAATAAGAATTTGAATCCCATTTCAGATGCACTTCGAATGAAGCCAGCATATTGGAAGACAAAGCTCTGCAGCAAATGGGAGGCAACTGGTCAGTGCCCCTTTGGAGAAAGATGTCACTTTGCTCATGGGCAATCAGATTTGCAGGCTCCACCTGGTGGGCGTGTTGAGGCTGAGGCGATATCGAATATCGGCTCTTTTCCAACGAGACCTCTCTCTTTTGTTCCTTCGGTTGTCGAAAGTACGGTTGTTGTGGGGGGTGCTCCAACTGAAAAAGAATCGAGAGGTAATAATATTGACAAGAGCCTATTGAAATGGAAAGTTCATAAGAAAATCAATCGCATTTATGCGGATTGGCTTGATGATGATCCATTGCTGGAGGATTGA

Network for GWHGAAZE015539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	108	132	2.30E-08
PF18044.2	zf-CCCH_4	169	190	9.90E-07
PF00642.25	zf-CCCH	248	274	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.478
	SRR3591706	second leaf	0.064
	SRR3591707	mature leaf	0.255
	SRR3591708	Shoot apex	1.257
	SRR3591709	Stem	0.367
	SRR3591710	White floral bud	4.629
	SRR3591711	White flower	13.890
	SRR3591712	Green floral bud	3.982
	SRR3591713	Yellow flower	5.563
SRP173429	SRR8316895	Juvenile bud stage	3.110
	SRR8316896	Juvenile bud stage	3.035
	SRR8316897	Juvenile bud stage	0.942
	SRR8316894	Third green stage	0.793
	SRR8316900	Third green stage	3.322
	SRR8316901	Third green stage	2.456
	SRR8316898	Complete white stage	0.199
	SRR8316899	Complete white stage	1.612
	SRR8316903	Complete white stage	0.288
	SRR8316902	Silver flowering stage	0.989
	SRR8316904	Silver flowering stage	0.552
	SRR8316905	Silver flowering stage	0.544
	SRR8316906	Gold flowering stage	1.636
	SRR8316907	Gold flowering stage	1.019
	SRR8316908	Gold flowering stage	1.415
SRP132670	SRR6706286	Control	2.907
	SRR6706287	Light intensity 50%	3.818
	SRR6706288	Light intensity 20%	3.945
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.235
	CNS0095593	Slightly white alabastrum(diploid) 2	2.459
	CNS0095594	Slightly white alabastrum(diploid) 3	2.618
	CNS0095595	Whole white alabastrum(diploid) 2	1.902
	CNS0095596	Whole white alabastrum(diploid) 3	3.239
	CNS0095597	Whole white alabastrum(diploid) 4	2.640
	CNS0095598	Silvery flower (diploied) 1	1.022
	CNS0095599	Silvery flower (diploied) 2	0.858
	CNS0095600	Silvery flower (diploied) 3	1.541
	CNS0095601	Golden flower (diploid) 1	0.910
	CNS0095602	Golden flower (diploid) 2	0.784
	CNS0095603	Golden flower (diploid) 3	0.676
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.828
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.281
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.685
	CNS0095610	Silvery flower (tetraploid) 1	3.047
	CNS0095611	Silvery flower (tetraploid) 2	2.176
	CNS0095612	Silvery flower (tetraploid) 3	5.244
	CNS0095613	Golden flower (tetraploid) 1	1.307
	CNS0095614	Golden flower (tetraploid) 2	1.308
	CNS0095615	Golden flower (tetraploid) 3	0.982
CRA001975	CRR073297	Stem 1	3.502
	CRR073298	Stem 2	1.978
	CRR073299	Stem 3	2.169
	CRR073300	Leaf 1	3.274
	CRR073301	Leaf 2	2.134
	CRR073302	Leaf 3	2.410
	CRR073303	Juvenile bud 1	2.650
	CRR073304	Juvenile bud 2	1.201
	CRR073305	Juvenile bud 3	1.724
	CRR073306	Third green 1	0.109
	CRR073307	Third green 2	0.472
	CRR073308	Third green 3	0.089
	CRR073309	Second white 1	1.577
	CRR073310	Second white 2	0.775
	CRR073311	Second white 3	1.921
	CRR073312	Silver flowering 1	0.225
	CRR073313	Silver flowering 2	0.662
	CRR073314	Silver flowering 3	0.671
	CRR073315	Gold flowering 1	0.953
	CRR073316	Gold flowering 2	0.952
	CRR073317	Gold flowering 3	0.183
	CRR073318	Tawny withering 1	0.798
	CRR073319	Tawny withering 2	0.603
	CRR073320	Tawny withering 3	0.656