Gene detail

Detail information of GWHGAAZE015519

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284217.1	0	PREDICTED: cyclin-dependent kinase F-1 [Vitis vinifera]
Swissprot	tr\|O80345\|CDKF1_ARATH	0	Cyclin-dependent kinase F-1
trEMBL	tr\|F6HH12\|F6HH12_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51508.1}
TAIR10	AT4G28980.2	7E-152	CDK-activating kinase 1AT

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	45531547	45536644	+
GWHAAZE00000004	mRNA	45531547	45536644	+
GWHAAZE00000004	exon	45531547	45532041	+
GWHAAZE00000004	exon	45534421	45534537	+
GWHAAZE00000004	exon	45535700	45536644	+
GWHAAZE00000004	CDS	45531547	45532041	+
GWHAAZE00000004	CDS	45534421	45534537	+
GWHAAZE00000004	CDS	45535700	45536644	+

Transcript Sequence
>GWHTAAZE015535 ATGGACCCACCACCCCCATCATCAAAAGCCTGGAGCATCCACACCCGCCCTGAGATCATCTCGAAATACGAAATCCAAGAACGGGTAGGTTCTGGCGCCTACTCCGACGTCTACAGAGCCCGGCGCCGCTCCGACTCGGTCCCCGTCGCCCTCAAGGAGATCCACGACTACCAATCGGCGTTCCGAGAGATTGACGCCCTTCAGATCCTCCAGCACTCCCCTAACGTCGTCAATATGCATGAGTACTTCTGGAGTGAAGACGAGGACGCTGTGCTTGTACTGGAGTTCTTGCCTACTGATTTGGCTTCTGTGATTCGGGAGGCCAAGAAGGGGTGGGAGGGTGGGCTCACTGTCGGTGAGATCAAGCGGTGGATCGTTCAGATTTTGTGTGCTGTTGATGCATGTCATCGGAATTCTATTGTGCATCGGGATTTGAAGCCATCTAATTTGTTGATCTCCGCCGATGGTAACCTAAAGTTGGCTGATTTCGGACAGGAAGTTCCGACTCTGAACAGAAACAATGAATCTTGGTATGGCTCTACTTTGACTGAGTTGCTCTCTACTGCTATTGAAAGATATAAAGAGCGTAAATTATGTGCTACAATGGGTAAGGCAAGGATACTTCTGGAGCCTGGGTTTGTTGCGGATGACAACCCGCAGCAGCAGGATCAGAGTTCTCTCAATCATACGGCTGTAGTTCAACCACTTCAAGTTATTCCCGAGTCAGACAGTGTATGCCAAGATGGCCAACTGAACTTAGACCAAGGAGGAGCTCCTCCGGGTAAAGAAAAATACGGGGGAGTGCTACTAGATGACACCAGAGCTAAAGACTCTTTCGAGGAAACTGATAAAGAAAGTAATGTTCAAGATGGTGATACATCCTGCCTTGCTACTTGTACCGCAAGTGACTTAGAAGATGATTTTTTCAAGAGCTCTTATTCTTACGAGGGTGATGGTGAAAATGACAGATACGGCCCTCTCACATCTTGTGTTGGGACCCGTTGGTTTAGAGCCCCTGAACTTCTTTATGGGTCAACCAACTATGGAGCCGAGGTTGACTTGTGGTCTCTCGGTTGTATTTTCGCGGAGCTATTTAATTTGGAGCCACTTTTTCCGGGAACTTCGGATATTGATCAACTAGGCAGGATTTTTACGGTTTTGGGAAATTTAACCGAGGACATTTGGCCTGGTTGTTCGAAACTTCCTGATTATCAAATAATTTCATTCAATACTGTAGAGAATCCTATTGGGTTAGAAGCTTCTCTGCCCAATCGGTCCGCGGATGAAATATTTCTTATCAAAAAGCTGATTTGCTTTGACCCATCGAGTAGAGCTACACCGATGGAACTGCTACATGACAAGTATTTAAATGAAGAACCTTTGCCGGTTCCCATCTCTGAGTTGAGGGTTCCTTCTAGTAACACTGCTCGGGATGACGGCTCACCTGGTGGTTGGGCCGATTACAGAGAAATGGATTCTGATTCTGACTTTGAGGATGATTTTGCTCGGCCAAACGTCACTGCAACCGACACTGGTTTCTCAATTCGGTTCCCATGA

Network for GWHGAAZE015519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	165	1.30E-30
PF00069.26	Pkinase	327	456	9.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CCRK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.808
	SRR3591706	second leaf	1.097
	SRR3591707	mature leaf	1.041
	SRR3591708	Shoot apex	1.014
	SRR3591709	Stem	1.660
	SRR3591710	White floral bud	1.175
	SRR3591711	White flower	1.593
	SRR3591712	Green floral bud	2.052
	SRR3591713	Yellow flower	1.162
SRP173429	SRR8316895	Juvenile bud stage	4.288
	SRR8316896	Juvenile bud stage	6.416
	SRR8316897	Juvenile bud stage	0.539
	SRR8316894	Third green stage	2.396
	SRR8316900	Third green stage	11.652
	SRR8316901	Third green stage	9.501
	SRR8316898	Complete white stage	2.661
	SRR8316899	Complete white stage	8.231
	SRR8316903	Complete white stage	4.338
	SRR8316902	Silver flowering stage	2.780
	SRR8316904	Silver flowering stage	3.648
	SRR8316905	Silver flowering stage	1.671
	SRR8316906	Gold flowering stage	5.583
	SRR8316907	Gold flowering stage	5.019
	SRR8316908	Gold flowering stage	2.375
SRP132670	SRR6706286	Control	7.606
	SRR6706287	Light intensity 50%	7.188
	SRR6706288	Light intensity 20%	8.090
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.221
	CNS0095593	Slightly white alabastrum(diploid) 2	5.221
	CNS0095594	Slightly white alabastrum(diploid) 3	5.202
	CNS0095595	Whole white alabastrum(diploid) 2	6.633
	CNS0095596	Whole white alabastrum(diploid) 3	6.924
	CNS0095597	Whole white alabastrum(diploid) 4	4.774
	CNS0095598	Silvery flower (diploied) 1	4.341
	CNS0095599	Silvery flower (diploied) 2	4.199
	CNS0095600	Silvery flower (diploied) 3	7.232
	CNS0095601	Golden flower (diploid) 1	3.143
	CNS0095602	Golden flower (diploid) 2	8.437
	CNS0095603	Golden flower (diploid) 3	6.811
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.764
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.582
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.046
	CNS0095610	Silvery flower (tetraploid) 1	8.543
	CNS0095611	Silvery flower (tetraploid) 2	6.822
	CNS0095612	Silvery flower (tetraploid) 3	7.145
	CNS0095613	Golden flower (tetraploid) 1	4.039
	CNS0095614	Golden flower (tetraploid) 2	7.102
	CNS0095615	Golden flower (tetraploid) 3	6.936
CRA001975	CRR073297	Stem 1	7.108
	CRR073298	Stem 2	7.469
	CRR073299	Stem 3	6.758
	CRR073300	Leaf 1	9.329
	CRR073301	Leaf 2	9.404
	CRR073302	Leaf 3	7.567
	CRR073303	Juvenile bud 1	7.946
	CRR073304	Juvenile bud 2	9.577
	CRR073305	Juvenile bud 3	8.521
	CRR073306	Third green 1	5.503
	CRR073307	Third green 2	4.753
	CRR073308	Third green 3	4.073
	CRR073309	Second white 1	2.709
	CRR073310	Second white 2	3.485
	CRR073311	Second white 3	5.269
	CRR073312	Silver flowering 1	6.238
	CRR073313	Silver flowering 2	4.645
	CRR073314	Silver flowering 3	4.773
	CRR073315	Gold flowering 1	6.618
	CRR073316	Gold flowering 2	7.820
	CRR073317	Gold flowering 3	5.421
	CRR073318	Tawny withering 1	7.215
	CRR073319	Tawny withering 2	5.304
	CRR073320	Tawny withering 3	7.944