Gene detail

Detail information of GWHGAAZE015498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284217.1	3.8566E-136	PREDICTED: cyclin-dependent kinase F-1 [Vitis vinifera]
Swissprot	tr\|O80345\|CDKF1_ARATH	2E-108	Cyclin-dependent kinase F-1
trEMBL	tr\|F6HH12\|F6HH12_VITVI	1E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51508.1}
TAIR10	AT4G28980.2	1E-85	CDK-activating kinase 1AT

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	43560469	43565303	-
GWHAAZE00000004	mRNA	43560469	43565303	-
GWHAAZE00000004	exon	43564809	43565303	-
GWHAAZE00000004	exon	43562566	43562736	-
GWHAAZE00000004	exon	43562233	43562349	-
GWHAAZE00000004	exon	43560469	43561413	-
GWHAAZE00000004	CDS	43564809	43565303	-
GWHAAZE00000004	CDS	43562566	43562736	-
GWHAAZE00000004	CDS	43562233	43562349	-
GWHAAZE00000004	CDS	43560469	43561413	-

Transcript Sequence
>GWHTAAZE015514 ATGGACCCGCCACCCCCATCATCAAAAGCCTGGAGCATCCACACCCGCCCTGAGATCATCTCGAAATACGAAATCCAAGAACGGGTAGGTTCTGGCGCCTACTCCGACGTCTACAGAGCCTGCCGCCGCTCCGACTCGGTCCCCGTCGCCCTCAAGGAGATCCACGACTACCAATCGGCGTTCCGAGAGATTGATGCCCTTCAGATCCTCCAGCACTCCCCTAACGTCGTCAATATGCATGAGTACTTCTGGAGTGAAGACGAGGACGCTGTGCTTGTACTGGAGTTCTTGCCTTCTGATTTGGCTTCTGTGATTCGGGAGGCCAAGAAGGGGTGGGAGGGTGGGCTCACTGTCGGTGAGATCAAGCGGTGGATCGTTCAGATTTTGTGTGCTGTTGATGCATGTCATCGGAATTCGATTGTGCATCGGGATTTGAAGCCGTCTAATTTGTTGATCTCCGCCGATGGTAACCTAAAGTTGGCTGATTTCGGACAGAATGGATGGCGTATGCCTGCCCTTATATCTGCTGATCTTATTGTCCTAAATAATAATGTTCCTGATTATTTGCCTAACTTGGAGGTTGGGGATAGGGTGGAGTGGGGTCTGACTACCAGTGAACGCTTCACTACTGCTTCAACCTGGAATGCTCTTAGGCAACATTTCCAGGAAGTTCCAACTCTGAACAGAAACAATGAATCTTGGTATGGCTCTTCTTTGACTGAATTGCTTTCTACTGCTATTGAAAGATATAAAGAAAGTAAATTATGTGCTACAATGGGTAAGGCAAGGATACTTCTGGAGCCTGGGTTTGTTGCGGATGACAACCCGCAGCCGCAGGATCAGAGTTCTCTCAATCATACAGCTGTAGTTCAACCACTTCAAGTTATTCCCGAGTCAGACAGTGTATGCCAAGATGGCCAACTGAACATAGACCAAGGAGGAGCTCCTCCGGGTAAAGAAAAATACGGGGGAGTGCTACTAGATGACACCAGAGCTAAAGACTCTTTCGACGAAACTGATAAAGAAAGTAATGTTCAAGATGGTGATACATCCTGCCTTGCTACTTGTACCGCAAGTGACTTAGAAGATGATTTTTTCAAGAGCTCTTATTCTTACGAGGGTGATGGTGAAAATGACAGATACGGCCCTCTCACATCTTGTGTTGGGACCCGTTGGTTTAGAGCCCCTGAACTTCTTTATGGGTCAACCAACTATGGAGCCGAGGTTGACTTGTGGTCTCTCGGTTGTATTTTTGCGGAACTATTTAATTTGGAGCCACTTTTTCCGGGAACTTCCGATATTGATCAACTAGGCAGGATTTTTACGGTTTTGGGAAACTTAACCGAGGACATTTGGCCTGGTTGTTCGAAACTTCCTGATTATCAAATAATTTCATTCAATACTGTAGAGAATCCTATTGGGTTAGAAGCTTCTCTGCCCAATCGGTCCGCGGATGAAATATTTCTTATCAAAAAGCTGATTTGCTTTGACCCATCAAGTAGAGCTACACCGATGGAACTGCTACATGACAAGTATTTAAATGAAGAACCTTTGCCGGTTCCCATCTCTGAGTTGAGGGTTCCTTCTAGTAACACTGCTCGGGATGACGGCTCACCTGGTGGTTGGGCCGATTACAGAGAAATGGATTCTGATTCTGACTTTGAGGATGATTTTGCTCGGCCAAATGTCACTGCAACCGACACTGGTTTCTCAATTCGGTTCCAATGA

Network for GWHGAAZE015498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	164	2.90E-30
PF00069.26	Pkinase	384	513	1.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-CCRK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.285
	SRR3591706	second leaf	7.336
	SRR3591707	mature leaf	7.994
	SRR3591708	Shoot apex	7.358
	SRR3591709	Stem	10.025
	SRR3591710	White floral bud	11.755
	SRR3591711	White flower	13.712
	SRR3591712	Green floral bud	19.842
	SRR3591713	Yellow flower	10.714
SRP173429	SRR8316895	Juvenile bud stage	5.298
	SRR8316896	Juvenile bud stage	8.215
	SRR8316897	Juvenile bud stage	7.105
	SRR8316894	Third green stage	3.650
	SRR8316900	Third green stage	12.574
	SRR8316901	Third green stage	13.317
	SRR8316898	Complete white stage	3.648
	SRR8316899	Complete white stage	10.324
	SRR8316903	Complete white stage	7.909
	SRR8316902	Silver flowering stage	4.950
	SRR8316904	Silver flowering stage	4.838
	SRR8316905	Silver flowering stage	2.787
	SRR8316906	Gold flowering stage	9.496
	SRR8316907	Gold flowering stage	10.039
	SRR8316908	Gold flowering stage	12.635
SRP132670	SRR6706286	Control	9.348
	SRR6706287	Light intensity 50%	8.699
	SRR6706288	Light intensity 20%	9.271
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.422
	CNS0095593	Slightly white alabastrum(diploid) 2	5.401
	CNS0095594	Slightly white alabastrum(diploid) 3	4.909
	CNS0095595	Whole white alabastrum(diploid) 2	5.560
	CNS0095596	Whole white alabastrum(diploid) 3	6.989
	CNS0095597	Whole white alabastrum(diploid) 4	7.104
	CNS0095598	Silvery flower (diploied) 1	7.491
	CNS0095599	Silvery flower (diploied) 2	4.463
	CNS0095600	Silvery flower (diploied) 3	9.878
	CNS0095601	Golden flower (diploid) 1	6.736
	CNS0095602	Golden flower (diploid) 2	9.097
	CNS0095603	Golden flower (diploid) 3	9.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.334
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.448
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.992
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.673
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.226
	CNS0095610	Silvery flower (tetraploid) 1	11.833
	CNS0095611	Silvery flower (tetraploid) 2	10.642
	CNS0095612	Silvery flower (tetraploid) 3	8.864
	CNS0095613	Golden flower (tetraploid) 1	7.097
	CNS0095614	Golden flower (tetraploid) 2	12.680
	CNS0095615	Golden flower (tetraploid) 3	11.989
CRA001975	CRR073297	Stem 1	7.347
	CRR073298	Stem 2	9.609
	CRR073299	Stem 3	7.532
	CRR073300	Leaf 1	11.151
	CRR073301	Leaf 2	10.800
	CRR073302	Leaf 3	7.657
	CRR073303	Juvenile bud 1	8.099
	CRR073304	Juvenile bud 2	10.317
	CRR073305	Juvenile bud 3	10.333
	CRR073306	Third green 1	7.828
	CRR073307	Third green 2	5.983
	CRR073308	Third green 3	6.611
	CRR073309	Second white 1	5.964
	CRR073310	Second white 2	4.519
	CRR073311	Second white 3	6.429
	CRR073312	Silver flowering 1	7.747
	CRR073313	Silver flowering 2	5.766
	CRR073314	Silver flowering 3	6.503
	CRR073315	Gold flowering 1	4.403
	CRR073316	Gold flowering 2	5.297
	CRR073317	Gold flowering 3	5.804
	CRR073318	Tawny withering 1	5.411
	CRR073319	Tawny withering 2	5.747
	CRR073320	Tawny withering 3	7.938