Gene detail

Detail information of GWHGAAZE015435

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007016140.1	0	Cell division control, Cdc6 isoform 2 [Theobroma cacao]
Swissprot	tr\|Q710E8\|ORC1A_ARATH	1E-29	Origin of replication complex subunit 1A {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A0A061GZW8\|A0A061GZW8_THECC	0	Cell division control, Cdc6 isoform 2 {ECO:0000313\|EMBL:EOY33759.1}
TAIR10	AT1G07270.1	7E-124	Cell division control, Cdc6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	40075607	40081064	+
GWHAAZE00000004	mRNA	40075607	40081064	+
GWHAAZE00000004	exon	40075607	40075825	+
GWHAAZE00000004	exon	40077202	40077276	+
GWHAAZE00000004	exon	40077367	40077476	+
GWHAAZE00000004	exon	40077663	40077769	+
GWHAAZE00000004	exon	40077899	40077958	+
GWHAAZE00000004	exon	40078504	40078568	+
GWHAAZE00000004	exon	40078964	40079014	+
GWHAAZE00000004	exon	40079166	40079215	+
GWHAAZE00000004	exon	40079416	40079548	+
GWHAAZE00000004	exon	40079795	40079894	+
GWHAAZE00000004	exon	40080068	40080114	+
GWHAAZE00000004	exon	40080194	40080289	+
GWHAAZE00000004	exon	40080939	40081064	+
GWHAAZE00000004	CDS	40075607	40075825	+
GWHAAZE00000004	CDS	40077202	40077276	+
GWHAAZE00000004	CDS	40077367	40077476	+
GWHAAZE00000004	CDS	40077663	40077769	+
GWHAAZE00000004	CDS	40077899	40077958	+
GWHAAZE00000004	CDS	40078504	40078568	+
GWHAAZE00000004	CDS	40078964	40079014	+
GWHAAZE00000004	CDS	40079166	40079215	+
GWHAAZE00000004	CDS	40079416	40079548	+
GWHAAZE00000004	CDS	40079795	40079894	+
GWHAAZE00000004	CDS	40080068	40080114	+
GWHAAZE00000004	CDS	40080194	40080289	+
GWHAAZE00000004	CDS	40080939	40081064	+

Transcript Sequence
>GWHTAAZE015451 ATGGAGCAATTGAGTGCGGTGAAAGACACTTTGCATGTATCAACCGCTCCATTTACAATTGTTGGTAGGGAAAACGAGCAAAATCAAATATTGGAATTCTGCAAGCAATGCGTAGCGCAAGAAAAGGCTGGGAGCTTATATGTGTGTGGATGCTTCGGAACTGGAAAATCTTTGTCTATAGAGAAAGTTAAAGACTCGCTGATTCATTGGGCAAAGGAGGAGGACTTTCAGTCACTAGATGTACTAACCATAAATTGTACCTATCTTACAAGCACCTCTGAAATTTTCAATAAGATACTATGGAATAATCAACCACAGAAGAAAAGCAATGGCCTTGCATCACCTCTAAAGAATCTTCAAATTTCTTATTCCCAAAGCAGGCAGTCATCTGGCATGAAAATGATGTTGGTTATTGCAGATGAGTTAGATTACTTGATTACTAAGGACCGGGCTGTGCTTCATGATCTTTTTATGCTAACAACCTTACCATCTTGCAGATGTATATTGATCGGTATCGCTAATGCTATTGACCTAGCTGATCGATTTCTTCCAAAGCTGCAGTCTTTAAATTTAGTTGTAACTTTTCAAGCCTACTCAAAGGACCAGATCATGATGATTCTCCGAGAGAGGCTAAGGGTGCTTTCGTACACCGTCTTCCAGCCACAAGCATTGGAACTATGTGCTAGAAGAGTTGCAGCTGCATCTGGGGATATGAGGAAAGCCCTTTGTGTTTGCAGGAGTGCAGTTGAGATACTAGAAGCCGAGCTAAGAGAATCTGCTTGCAATTTAAATACATCATCACGAGCGAGGGTTATTTCTGATCAACAGACAATTGTTTATGAGATTTTTAAAAAGCAAGACAACAATATTGTGAGGAGGGTTGACCATATGGCTATTGCTCTGTCAAAGGCATATAGATCACCGATAGTCGACACTATACAATCCCTCCCACAACATCAGCAGATAATTTCCGTGAAGCTTTTTCGCAAGGGGAAAAAGGATACAACTATAGGGGAGCTAAATAATTCGTACTTGGATATTTGCAAATCAACATCAATCCCATCCGTTGGCATAATGGAACTTTCAAGCATGTGCAAAGTCCTAGGTGACCAGATATGTAGTGACATTGATCGAATCTGTTGTGGTTTTTGGAGAGTTGACCTGAAAGGAGGTTTGAGATGGATCGAGCCCAGTGTTTCCGGGTGGGACAACAACGTCGACAGGTGCAATGAGGCCTAA

Network for GWHGAAZE015435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13401.7	AAA_22	42	171	3.60E-15
PF17872.2	AAA_lid_10	220	254	2.10E-06
PF09079.12	Cdc6_C	325	371	3.90E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02213	CDC6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0051301	biological_process	cell division

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.684
	SRR3591706	second leaf	0.956
	SRR3591707	mature leaf	0.634
	SRR3591708	Shoot apex	1.370
	SRR3591709	Stem	1.818
	SRR3591710	White floral bud	4.159
	SRR3591711	White flower	4.608
	SRR3591712	Green floral bud	4.458
	SRR3591713	Yellow flower	1.781
SRP173429	SRR8316895	Juvenile bud stage	1.459
	SRR8316896	Juvenile bud stage	2.343
	SRR8316897	Juvenile bud stage	0.265
	SRR8316894	Third green stage	0.834
	SRR8316900	Third green stage	0.795
	SRR8316901	Third green stage	3.634
	SRR8316898	Complete white stage	0.004
	SRR8316899	Complete white stage	0.108
	SRR8316903	Complete white stage	0.041
	SRR8316902	Silver flowering stage	0.012
	SRR8316904	Silver flowering stage	0.007
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.010
	SRR8316907	Gold flowering stage	0.036
	SRR8316908	Gold flowering stage	0.098
SRP132670	SRR6706286	Control	0.245
	SRR6706287	Light intensity 50%	0.564
	SRR6706288	Light intensity 20%	0.219
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.078
	CNS0095593	Slightly white alabastrum(diploid) 2	2.046
	CNS0095594	Slightly white alabastrum(diploid) 3	2.661
	CNS0095595	Whole white alabastrum(diploid) 2	3.386
	CNS0095596	Whole white alabastrum(diploid) 3	3.438
	CNS0095597	Whole white alabastrum(diploid) 4	1.659
	CNS0095598	Silvery flower (diploied) 1	0.101
	CNS0095599	Silvery flower (diploied) 2	0.028
	CNS0095600	Silvery flower (diploied) 3	0.011
	CNS0095601	Golden flower (diploid) 1	0.324
	CNS0095602	Golden flower (diploid) 2	0.119
	CNS0095603	Golden flower (diploid) 3	0.081
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.530
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.720
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.094
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.751
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.592
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.760
	CNS0095610	Silvery flower (tetraploid) 1	0.065
	CNS0095611	Silvery flower (tetraploid) 2	0.002
	CNS0095612	Silvery flower (tetraploid) 3	0.033
	CNS0095613	Golden flower (tetraploid) 1	0.011
	CNS0095614	Golden flower (tetraploid) 2	0.014
	CNS0095615	Golden flower (tetraploid) 3	0.092
CRA001975	CRR073297	Stem 1	0.290
	CRR073298	Stem 2	0.185
	CRR073299	Stem 3	0.031
	CRR073300	Leaf 1	0.668
	CRR073301	Leaf 2	2.251
	CRR073302	Leaf 3	0.225
	CRR073303	Juvenile bud 1	0.052
	CRR073304	Juvenile bud 2	0.023
	CRR073305	Juvenile bud 3	0.139
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.022
	CRR073309	Second white 1	0.014
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.055
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.027
	CRR073314	Silver flowering 3	0.010
	CRR073315	Gold flowering 1	0.020
	CRR073316	Gold flowering 2	0.058
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.027
	CRR073319	Tawny withering 2	0.006
	CRR073320	Tawny withering 3	0.093