Detail information of GWHGAAZE015393


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011089620.17.5303E-99PREDICTED: 40S ribosomal protein S16 [Sesamum indicum]
Swissprottr|O22647|RS16_FRIAG1E-9440S ribosomal protein S16
trEMBLtr|A0A068TMQ9|A0A068TMQ9_COFCA2E-97Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97194.1}
TAIR10AT5G18380.13E-72Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3742534737425781-
GWHAAZE00000004mRNA3742534737425781-
GWHAAZE00000004exon3742534737425781-
GWHAAZE00000004CDS3742534737425781-
Transcript Sequence

Network for GWHGAAZE015393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00380.20Ribosomal_S9121441.10E-31
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02960RP-S16e, RPS16 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf257.994
SRR3591706second leaf98.888
SRR3591707mature leaf67.659
SRR3591708Shoot apex333.953
SRR3591709Stem139.126
SRR3591710White floral bud97.812
SRR3591711White flower152.336
SRR3591712Green floral bud270.378
SRR3591713Yellow flower79.711
SRP173429 SRR8316895Juvenile bud stage 113.137
SRR8316896Juvenile bud stage 162.822
SRR8316897Juvenile bud stage 80.143
SRR8316894Third green stage 67.598
SRR8316900Third green stage 255.127
SRR8316901Third green stage 232.081
SRR8316898Complete white stage 48.223
SRR8316899Complete white stage 265.272
SRR8316903Complete white stage 64.849
SRR8316902Silver flowering stage37.919
SRR8316904Silver flowering stage37.612
SRR8316905Silver flowering stage17.692
SRR8316906Gold flowering stage 62.587
SRR8316907Gold flowering stage 70.990
SRR8316908Gold flowering stage 76.389
SRP132670SRR6706286Control229.344
SRR6706287Light intensity 50%214.609
SRR6706288Light intensity 20%259.232
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1310.437
CNS0095593Slightly white alabastrum(diploid) 2368.580
CNS0095594Slightly white alabastrum(diploid) 3311.313
CNS0095595Whole white alabastrum(diploid) 2288.108
CNS0095596Whole white alabastrum(diploid) 3375.185
CNS0095597Whole white alabastrum(diploid) 4279.618
CNS0095598Silvery flower (diploied) 1139.303
CNS0095599Silvery flower (diploied) 2137.970
CNS0095600Silvery flower (diploied) 3112.441
CNS0095601Golden flower (diploid) 1129.615
CNS0095602Golden flower (diploid) 299.829
CNS0095603Golden flower (diploid) 3105.047
CNS0095604Slightly white alabastrum(tetraploid) 1267.996
CNS0095605Slightly white alabastrum(tetraploid) 2280.521
CNS0095606Slightly white alabastrum(tetraploid) 3300.470
CNS0095607Whole white alabastrum(tetraploid) 1187.180
CNS0095608Whole white alabastrum(tetraploid) 2182.678
CNS0095609Whole white alabastrum(tetraploid) 3251.681
CNS0095610Silvery flower (tetraploid) 1113.683
CNS0095611Silvery flower (tetraploid) 2104.741
CNS0095612Silvery flower (tetraploid) 375.881
CNS0095613Golden flower (tetraploid) 176.093
CNS0095614Golden flower (tetraploid) 285.123
CNS0095615Golden flower (tetraploid) 351.334
CRA001975CRR073297Stem 1286.604
CRR073298Stem 2272.216
CRR073299Stem 3360.715
CRR073300Leaf 1336.262
CRR073301Leaf 2359.078
CRR073302Leaf 3581.995
CRR073303Juvenile bud 1384.309
CRR073304Juvenile bud 2376.421
CRR073305Juvenile bud 3293.372
CRR073306Third green 142.044
CRR073307Third green 266.151
CRR073308Third green 363.184
CRR073309Second white 187.409
CRR073310Second white 261.036
CRR073311Second white 331.902
CRR073312Silver flowering 166.728
CRR073313Silver flowering 2106.197
CRR073314Silver flowering 358.360
CRR073315Gold flowering 1269.287
CRR073316Gold flowering 2255.771
CRR073317Gold flowering 3226.628
CRR073318Tawny withering 1320.840
CRR073319Tawny withering 2285.869
CRR073320Tawny withering 3319.326