Gene detail

Detail information of GWHGAAZE015379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008242542.1	6.43781E-73	PREDICTED: derlin-1 [Prunus mume]
Swissprot	tr\|Q8VZU9\|DERL1_ARATH	7E-72	Derlin-1
trEMBL	tr\|M5W360\|M5W360_PRUPE	3E-73	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03693.1}
TAIR10	AT4G29330.1	1E-58	DERLIN-1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	37061159	37072996	+
GWHAAZE00000004	mRNA	37061159	37072996	+
GWHAAZE00000004	exon	37061159	37061207	+
GWHAAZE00000004	exon	37067799	37067934	+
GWHAAZE00000004	exon	37068799	37068871	+
GWHAAZE00000004	exon	37069043	37069136	+
GWHAAZE00000004	exon	37070657	37070785	+
GWHAAZE00000004	exon	37070943	37071069	+
GWHAAZE00000004	exon	37071824	37071903	+
GWHAAZE00000004	exon	37072552	37072661	+
GWHAAZE00000004	exon	37072752	37072996	+
GWHAAZE00000004	five_prime_UTR	37061159	37061207	+
GWHAAZE00000004	five_prime_UTR	37067799	37067934	+
GWHAAZE00000004	five_prime_UTR	37068799	37068866	+
GWHAAZE00000004	CDS	37068867	37068871	+
GWHAAZE00000004	CDS	37069043	37069136	+
GWHAAZE00000004	CDS	37070657	37070785	+
GWHAAZE00000004	CDS	37070943	37071069	+
GWHAAZE00000004	CDS	37071824	37071903	+
GWHAAZE00000004	CDS	37072552	37072661	+
GWHAAZE00000004	CDS	37072752	37072791	+
GWHAAZE00000004	three_prime_UTR	37072792	37072996	+

Transcript Sequence
>GWHTAAZE015395 TCAGTGAACACACAGATCTCTCGGTTCGAGATATGTCTTCACCAGCAGAGTACTATCAGTCGCTCCCACCCATAAGCAAGGCTTATGGGACCTTGTGCTTGTTGGCAACTACAGCATTTCAATTTGGATTAGTTAATCCTGCAAATATTGCATTGTTGTATGAGTTAGCAATCTTTCGCTTTCAGGTGTGGAGGCTGATTACAAATTTCTTTTCCTGGGAAAATTCTCTATAAATTTTGGGATTCGTCTTTTAATGATAGCAAGATATGGAGTACAACTAGAGAGTGGACCATTCCAAAGGCGTACGGCAGATTTCTTGTGGATGATGATATTTGGAGGTTTGACACTACTGGTTTTATCTGCCATCCCCATGCTTTGGTCCCCCTTCTTAGGGGTATCACTGGTTTTCATGCTTCTCTATGTGTGGAGTAGAGAATTTCCTAATGCAAATATCAACATTTATGGCCTTGTTACCCTCAAGGCTTTTTATCTACCGTGGGCTATGCTTGTTTTGGATGTTATATTTGGTTCTCCAATTATGCCGGATCTGATGGGAATCATTGCTGGGCATCTATATTACTTCTTGACTGTGTTGCATCCACTTGCTGGTGGCTGCTGCGCTTCACCAGCAACCACTGCTGCAACTAGAGGACGTCTAGTGATCAGAGCTACTGTGCCAGTGGAATGGTTGGCAGGTATCGAATCGGAGGTCCAAGAAATCAACCCCAGCCCGATAGCAGAACTGGCGGTGACGCCTTCAGAGGAAGATCTTATCGAGTTGGTGGCTAAAATTCTGAGCACTTTCGAAGGGATCAAAAGGTACCGAGTTCATTGCTGATGCAGCTTTTTTCTTTTCTTTTTCTTTCCCACATTCAATCATCCCACCGCGGCCCGAATTATGCAAATACTATTATTTTAAATCAATTCTGTAATCTTGTCAAGGAAATTAATTGGTGGGAAAAATCTAATTGCTGACAAAATGTAGTTTTAGATTCTTGTAGACTTTGTAAGTATTGATATTTATTTAAGTTGCTATTTTCCAA

Network for GWHGAAZE015379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04511.16	DER1	2	117	2.30E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13989	DERL2_3	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.211
	SRR3591706	second leaf	14.617
	SRR3591707	mature leaf	10.692
	SRR3591708	Shoot apex	17.885
	SRR3591709	Stem	25.893
	SRR3591710	White floral bud	22.358
	SRR3591711	White flower	31.695
	SRR3591712	Green floral bud	22.750
	SRR3591713	Yellow flower	30.260
SRP173429	SRR8316895	Juvenile bud stage	19.088
	SRR8316896	Juvenile bud stage	26.562
	SRR8316897	Juvenile bud stage	23.096
	SRR8316894	Third green stage	6.491
	SRR8316900	Third green stage	25.865
	SRR8316901	Third green stage	27.329
	SRR8316898	Complete white stage	10.643
	SRR8316899	Complete white stage	29.679
	SRR8316903	Complete white stage	18.776
	SRR8316902	Silver flowering stage	19.990
	SRR8316904	Silver flowering stage	18.970
	SRR8316905	Silver flowering stage	9.029
	SRR8316906	Gold flowering stage	44.660
	SRR8316907	Gold flowering stage	42.610
	SRR8316908	Gold flowering stage	38.780
SRP132670	SRR6706286	Control	14.051
	SRR6706287	Light intensity 50%	13.995
	SRR6706288	Light intensity 20%	13.907
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.017
	CNS0095593	Slightly white alabastrum(diploid) 2	25.658
	CNS0095594	Slightly white alabastrum(diploid) 3	21.930
	CNS0095595	Whole white alabastrum(diploid) 2	19.182
	CNS0095596	Whole white alabastrum(diploid) 3	14.580
	CNS0095597	Whole white alabastrum(diploid) 4	18.155
	CNS0095598	Silvery flower (diploied) 1	18.215
	CNS0095599	Silvery flower (diploied) 2	29.999
	CNS0095600	Silvery flower (diploied) 3	25.180
	CNS0095601	Golden flower (diploid) 1	33.161
	CNS0095602	Golden flower (diploid) 2	34.562
	CNS0095603	Golden flower (diploid) 3	32.602
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.211
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.770
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.292
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.280
	CNS0095610	Silvery flower (tetraploid) 1	17.818
	CNS0095611	Silvery flower (tetraploid) 2	16.912
	CNS0095612	Silvery flower (tetraploid) 3	14.134
	CNS0095613	Golden flower (tetraploid) 1	17.641
	CNS0095614	Golden flower (tetraploid) 2	17.751
	CNS0095615	Golden flower (tetraploid) 3	26.152
CRA001975	CRR073297	Stem 1	8.782
	CRR073298	Stem 2	5.216
	CRR073299	Stem 3	6.710
	CRR073300	Leaf 1	7.686
	CRR073301	Leaf 2	7.698
	CRR073302	Leaf 3	9.063
	CRR073303	Juvenile bud 1	6.689
	CRR073304	Juvenile bud 2	6.664
	CRR073305	Juvenile bud 3	5.476
	CRR073306	Third green 1	4.594
	CRR073307	Third green 2	5.923
	CRR073308	Third green 3	3.903
	CRR073309	Second white 1	8.920
	CRR073310	Second white 2	7.088
	CRR073311	Second white 3	5.897
	CRR073312	Silver flowering 1	7.790
	CRR073313	Silver flowering 2	11.082
	CRR073314	Silver flowering 3	9.330
	CRR073315	Gold flowering 1	3.185
	CRR073316	Gold flowering 2	5.679
	CRR073317	Gold flowering 3	4.913
	CRR073318	Tawny withering 1	14.142
	CRR073319	Tawny withering 2	17.310
	CRR073320	Tawny withering 3	15.025