Gene detail

Detail information of GWHGAAZE015374

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010656246.1	0	PREDICTED: NAC domain-containing protein 8 isoform X3 [Vitis vinifera]
Swissprot	tr\|Q6NQK2\|NAC8_ARATH	1E-67	NAC domain-containing protein 8
trEMBL	tr\|A5BJQ5\|A5BJQ5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61437.1}
TAIR10	AT4G29230.1	3E-124	NAC domain containing protein 75

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	36884639	36890763	-
GWHAAZE00000004	mRNA	36884639	36890763	-
GWHAAZE00000004	exon	36884639	36884728	-
GWHAAZE00000004	exon	36886878	36886970	-
GWHAAZE00000004	exon	36887598	36887897	-
GWHAAZE00000004	exon	36888948	36889498	-
GWHAAZE00000004	exon	36890083	36890269	-
GWHAAZE00000004	exon	36890641	36890763	-
GWHAAZE00000004	CDS	36890641	36890763	-
GWHAAZE00000004	CDS	36890083	36890269	-
GWHAAZE00000004	CDS	36888948	36889498	-
GWHAAZE00000004	CDS	36887598	36887897	-
GWHAAZE00000004	CDS	36886878	36886970	-
GWHAAZE00000004	CDS	36884639	36884728	-

Transcript Sequence
>GWHTAAZE015390 ATGAGTAAGAATCAGTTTGGATCAATTAGTAGTTCTGATCTCATTGATGCAAAGCTTGAAGAGCATCAATTGTGTGGATCCAAACACTGCCCTAGTTGTGGACACAAGCTTGAAGGAAAGCCGGATTGGGTAGGTCTACCAGCAGGAGTGAAATTTGACCCAACGGATCAAGAATTAATTGAACACCTTGAAGCAAAAGTAGAAGAAGCTAATAACGGCTCATCAAATTCCCACCCTTTGATTGATGAATTCATCCCTACTATTGAAGGTGAAGATGGGATTTGTTATACTCATCCTGAAAAACTCCCAGGAGTTACAAGAGATGGACTCAGTAGACATTTCTTCCATAGACCCTCAAAAGCTTACACAACCGGTACACGGAAAAGGCGCAAAATTCAAACCGAATGTGACCTCCAAGGTGGCGAGACGAGGTGGCACAAAACCGGCAAGACTAGGCCGGTGATGGTCAATGGTAAACAGAAAGGGTGCAAGAAGATCTTGGTCCTCTATACAAACTTTGGGAAGAACCGAAAACCGGAAAAGACCAATTGGGTGATGCACCAATACCACATGGGAATGCACGAGGAGGAAAGAGAAGGAGAGCTTGTGGTATCGAAGATTTTCTATCAGACTCAACCGCGGCAGTGTAATTGGGGAGAGAGGATGAGTGTGGTGGTGGAAGGGAATAGGGATAGTGGGAGTGGGAGTTGCTCTTCTAGGGAAGTGATTGGTCAAATTGATGAGTTTTCCGGTGGTGGCGGTGGTGGTGGAATGGGAAGTTATGGTGGTGGGATGGATATGCAACAATTGAAAGCTCATGACCATTTTAGCTTTGTTCCATTTAGGGAAACCTTTGATGAGGTGGGAACAGGATCAGGAGGAGGAGAGGGTTCAACTGGAAGGGAGGGTCAGGTGACAGGCACGTGCGAGGAGCGTGACCTTCAAAGGACCCAGCACGTGACCCACCATCATCATCATGATCATGATCATCATAATCAGCTTTCAACAGCAACCTTCCACGTCAGCAGACCATCTCACTCAATATCCACCATAATCACTTCACCACCTCCTCTCCATCACACCTCCATTGATAATATTCTTGATGATCATCAACACTCCTTCCACGTCAATTCACTAATGCTCCAAAACCAAAATTTTCAGCAACACCAACAGCATCATAAGATGGGAGGGCGGTCTGCTTCTGGATTGGAAGAACTCATAATGGGCTGCACTTCATCTGATCATATAAAAGAGGAGTCATCCATCACGAACCCACAAGAGACAGACTGGTTGAAGTACTCCAACTTCTGGCCTGACCCTGACAATCCGGATCATCATGGGTAG

Network for GWHGAAZE015374

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	47	191	1.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.802
	SRR3591706	second leaf	3.162
	SRR3591707	mature leaf	2.211
	SRR3591708	Shoot apex	4.186
	SRR3591709	Stem	8.743
	SRR3591710	White floral bud	2.244
	SRR3591711	White flower	1.722
	SRR3591712	Green floral bud	3.047
	SRR3591713	Yellow flower	0.525
SRP173429	SRR8316895	Juvenile bud stage	1.215
	SRR8316896	Juvenile bud stage	1.343
	SRR8316897	Juvenile bud stage	0.673
	SRR8316894	Third green stage	0.837
	SRR8316900	Third green stage	1.167
	SRR8316901	Third green stage	0.627
	SRR8316898	Complete white stage	0.096
	SRR8316899	Complete white stage	0.921
	SRR8316903	Complete white stage	0.246
	SRR8316902	Silver flowering stage	0.192
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.109
	SRR8316906	Gold flowering stage	0.255
	SRR8316907	Gold flowering stage	0.034
	SRR8316908	Gold flowering stage	0.426
SRP132670	SRR6706286	Control	1.085
	SRR6706287	Light intensity 50%	1.042
	SRR6706288	Light intensity 20%	1.279
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.279
	CNS0095593	Slightly white alabastrum(diploid) 2	2.739
	CNS0095594	Slightly white alabastrum(diploid) 3	2.827
	CNS0095595	Whole white alabastrum(diploid) 2	1.023
	CNS0095596	Whole white alabastrum(diploid) 3	1.162
	CNS0095597	Whole white alabastrum(diploid) 4	1.313
	CNS0095598	Silvery flower (diploied) 1	1.384
	CNS0095599	Silvery flower (diploied) 2	1.142
	CNS0095600	Silvery flower (diploied) 3	0.458
	CNS0095601	Golden flower (diploid) 1	1.107
	CNS0095602	Golden flower (diploid) 2	0.330
	CNS0095603	Golden flower (diploid) 3	0.565
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.645
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.809
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.821
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.564
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.537
	CNS0095610	Silvery flower (tetraploid) 1	0.342
	CNS0095611	Silvery flower (tetraploid) 2	0.234
	CNS0095612	Silvery flower (tetraploid) 3	0.179
	CNS0095613	Golden flower (tetraploid) 1	0.176
	CNS0095614	Golden flower (tetraploid) 2	0.336
	CNS0095615	Golden flower (tetraploid) 3	0.091
CRA001975	CRR073297	Stem 1	2.576
	CRR073298	Stem 2	2.284
	CRR073299	Stem 3	3.654
	CRR073300	Leaf 1	2.029
	CRR073301	Leaf 2	2.433
	CRR073302	Leaf 3	1.206
	CRR073303	Juvenile bud 1	1.154
	CRR073304	Juvenile bud 2	0.889
	CRR073305	Juvenile bud 3	1.155
	CRR073306	Third green 1	0.143
	CRR073307	Third green 2	0.405
	CRR073308	Third green 3	0.351
	CRR073309	Second white 1	0.115
	CRR073310	Second white 2	0.033
	CRR073311	Second white 3	0.383
	CRR073312	Silver flowering 1	0.849
	CRR073313	Silver flowering 2	0.098
	CRR073314	Silver flowering 3	0.141
	CRR073315	Gold flowering 1	1.676
	CRR073316	Gold flowering 2	1.381
	CRR073317	Gold flowering 3	0.693
	CRR073318	Tawny withering 1	8.941
	CRR073319	Tawny withering 2	10.190
	CRR073320	Tawny withering 3	10.987