Detail information of GWHGAAZE015338


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008459153.11.0686E-110PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Cucumis melo]
Swissprottr|Q9SZE4|VP322_ARATH1E-100Vacuolar protein sorting-associated protein 32 homolog 2
trEMBLtr|A0A0A0LHT5|A0A0A0LHT5_CUCSA7E-111Uncharacterized protein {ECO:0000313|EMBL:KGN60554.1}
TAIR10AT2G19830.12E-55SNF7 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3209851132101341-
GWHAAZE00000004mRNA3209851132101341-
GWHAAZE00000004exon3209851132098702-
GWHAAZE00000004exon3209882332098937-
GWHAAZE00000004exon3210004032100131-
GWHAAZE00000004exon3210025532100340-
GWHAAZE00000004exon3210116232101261-
GWHAAZE00000004exon3210133632101341-
GWHAAZE00000004CDS3210133632101341-
GWHAAZE00000004CDS3210116232101261-
GWHAAZE00000004CDS3210025532100340-
GWHAAZE00000004CDS3210004032100131-
GWHAAZE00000004CDS3209882332098937-
GWHAAZE00000004CDS3209851132098702-
Transcript Sequence

Network for GWHGAAZE015338

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.22Snf741631.20E-43
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12194CHMP4, SNF7, VPS32 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034biological_processvacuolar transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf96.280
SRR3591706second leaf51.764
SRR3591707mature leaf70.845
SRR3591708Shoot apex53.418
SRR3591709Stem140.405
SRR3591710White floral bud121.383
SRR3591711White flower162.756
SRR3591712Green floral bud95.621
SRR3591713Yellow flower185.170
SRP173429 SRR8316895Juvenile bud stage 40.212
SRR8316896Juvenile bud stage 75.005
SRR8316897Juvenile bud stage 44.477
SRR8316894Third green stage 23.779
SRR8316900Third green stage 78.493
SRR8316901Third green stage 77.769
SRR8316898Complete white stage 87.191
SRR8316899Complete white stage 194.505
SRR8316903Complete white stage 125.642
SRR8316902Silver flowering stage90.235
SRR8316904Silver flowering stage118.144
SRR8316905Silver flowering stage64.888
SRR8316906Gold flowering stage 214.052
SRR8316907Gold flowering stage 207.277
SRR8316908Gold flowering stage 252.440
SRP132670SRR6706286Control108.601
SRR6706287Light intensity 50%112.636
SRR6706288Light intensity 20%112.889
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.071
CNS0095593Slightly white alabastrum(diploid) 269.832
CNS0095594Slightly white alabastrum(diploid) 360.695
CNS0095595Whole white alabastrum(diploid) 262.520
CNS0095596Whole white alabastrum(diploid) 350.101
CNS0095597Whole white alabastrum(diploid) 470.599
CNS0095598Silvery flower (diploied) 192.357
CNS0095599Silvery flower (diploied) 275.922
CNS0095600Silvery flower (diploied) 3190.335
CNS0095601Golden flower (diploid) 189.757
CNS0095602Golden flower (diploid) 2174.905
CNS0095603Golden flower (diploid) 3181.142
CNS0095604Slightly white alabastrum(tetraploid) 145.534
CNS0095605Slightly white alabastrum(tetraploid) 240.036
CNS0095606Slightly white alabastrum(tetraploid) 354.895
CNS0095607Whole white alabastrum(tetraploid) 143.784
CNS0095608Whole white alabastrum(tetraploid) 237.978
CNS0095609Whole white alabastrum(tetraploid) 363.428
CNS0095610Silvery flower (tetraploid) 1175.661
CNS0095611Silvery flower (tetraploid) 2207.724
CNS0095612Silvery flower (tetraploid) 3169.496
CNS0095613Golden flower (tetraploid) 1172.842
CNS0095614Golden flower (tetraploid) 2170.751
CNS0095615Golden flower (tetraploid) 3231.806
CRA001975CRR073297Stem 194.660
CRR073298Stem 294.044
CRR073299Stem 3103.798
CRR073300Leaf 1107.259
CRR073301Leaf 2102.500
CRR073302Leaf 3107.145
CRR073303Juvenile bud 1127.880
CRR073304Juvenile bud 2122.770
CRR073305Juvenile bud 3155.932
CRR073306Third green 1120.840
CRR073307Third green 2126.285
CRR073308Third green 3119.483
CRR073309Second white 1163.066
CRR073310Second white 2136.547
CRR073311Second white 3127.995
CRR073312Silver flowering 1157.010
CRR073313Silver flowering 2162.278
CRR073314Silver flowering 3140.809
CRR073315Gold flowering 1120.286
CRR073316Gold flowering 2119.514
CRR073317Gold flowering 3121.280
CRR073318Tawny withering 1115.478
CRR073319Tawny withering 296.964
CRR073320Tawny withering 3124.237