Detail information of GWHGAAZE015319


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010090010.15.02612E-84hypothetical protein L484_027240 [Morus notabilis]
trEMBLtr|W9R5V4|W9R5V4_9ROSA2E-84Uncharacterized protein {ECO:0000313|EMBL:EXB38807.1}
TAIR10AT2G19710.15E-37Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3138360131386309-
GWHAAZE00000004mRNA3138360131386309-
GWHAAZE00000004exon3138614231386309-
GWHAAZE00000004exon3138513231385272-
GWHAAZE00000004exon3138475131384982-
GWHAAZE00000004exon3138360131384217-
GWHAAZE00000004CDS3138614231386309-
GWHAAZE00000004CDS3138513231385272-
GWHAAZE00000004CDS3138475131384982-
GWHAAZE00000004CDS3138360131384217-
Transcript Sequence

Network for GWHGAAZE015319

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03398.15Ist11854.00E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19476IST1 Endocytosis map04144

Gene Ontology

GO term OntologyName
GO:0015031biological_processprotein transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.192
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.099
SRR3591709Stem0.179
SRR3591710White floral bud1.422
SRR3591711White flower3.369
SRR3591712Green floral bud0.209
SRR3591713Yellow flower4.803
SRP173429 SRR8316895Juvenile bud stage 0.030
SRR8316896Juvenile bud stage 0.228
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.195
SRR8316900Third green stage 0.135
SRR8316901Third green stage 0.445
SRR8316898Complete white stage 1.059
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 3.558
SRR8316902Silver flowering stage3.606
SRR8316904Silver flowering stage6.764
SRR8316905Silver flowering stage4.689
SRR8316906Gold flowering stage 18.176
SRR8316907Gold flowering stage 11.203
SRR8316908Gold flowering stage 10.287
SRP132670SRR6706286Control0.116
SRR6706287Light intensity 50%0.407
SRR6706288Light intensity 20%0.179
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.677
CNS0095593Slightly white alabastrum(diploid) 20.144
CNS0095594Slightly white alabastrum(diploid) 30.427
CNS0095595Whole white alabastrum(diploid) 20.405
CNS0095596Whole white alabastrum(diploid) 30.571
CNS0095597Whole white alabastrum(diploid) 40.736
CNS0095598Silvery flower (diploied) 11.892
CNS0095599Silvery flower (diploied) 20.914
CNS0095600Silvery flower (diploied) 311.590
CNS0095601Golden flower (diploid) 11.355
CNS0095602Golden flower (diploid) 28.439
CNS0095603Golden flower (diploid) 37.273
CNS0095604Slightly white alabastrum(tetraploid) 10.405
CNS0095605Slightly white alabastrum(tetraploid) 20.078
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.450
CNS0095608Whole white alabastrum(tetraploid) 20.771
CNS0095609Whole white alabastrum(tetraploid) 30.489
CNS0095610Silvery flower (tetraploid) 13.340
CNS0095611Silvery flower (tetraploid) 28.138
CNS0095612Silvery flower (tetraploid) 324.890
CNS0095613Golden flower (tetraploid) 17.289
CNS0095614Golden flower (tetraploid) 22.676
CNS0095615Golden flower (tetraploid) 358.730
CRA001975CRR073297Stem 10.077
CRR073298Stem 20.075
CRR073299Stem 30.000
CRR073300Leaf 10.052
CRR073301Leaf 20.116
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.428
CRR073307Third green 20.818
CRR073308Third green 30.776
CRR073309Second white 11.172
CRR073310Second white 20.928
CRR073311Second white 31.106
CRR073312Silver flowering 11.297
CRR073313Silver flowering 20.348
CRR073314Silver flowering 30.614
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.072