Gene detail

Detail information of GWHGAAZE015303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514144.1	4.683E-171	1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
Swissprot	tr\|Q9ZUN4\|ACCO1_ARATH	5E-158	1-aminocyclopropane-1-carboxylate oxidase 1
trEMBL	tr\|B9RKA0\|B9RKA0_RICCO	2E-171	1-aminocyclopropane-1-carboxylate oxidase, putative {ECO:0000313\|EMBL:EEF48098.1}
TAIR10	AT2G19590.1	4E-126	ACC oxidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	30929841	30931725	-
GWHAAZE00000004	mRNA	30929841	30931725	-
GWHAAZE00000004	exon	30929841	30930423	-
GWHAAZE00000004	exon	30931298	30931521	-
GWHAAZE00000004	exon	30931620	30931725	-
GWHAAZE00000004	five_prime_UTR	30931722	30931725	-
GWHAAZE00000004	CDS	30931620	30931721	-
GWHAAZE00000004	CDS	30931298	30931521	-
GWHAAZE00000004	CDS	30929841	30930423	-

Transcript Sequence
>GWHTAAZE015319 GGAGATGGAGATACCTGTGATAGATTTCAGTGATCTTGAAGGAAAGAACAGAGCCAAAACAATGGCTCTTCTCCACCATGCTTGTGAGAAATGGGGCTTCTTTCAGGTTGAAAACCATGGAATTGACAAGAAGTTGATGGAGAAAGTTAAGCAATTAGTGAATCAACACTATGAAGAGAGCATGAAGGAAAGGTTTTACGAGTCGGATATAGCTAAGAGATTCGATAGCAATGGCAATGCGACTGATGTCGACTGGGAAAGCGCGTTTTTCATTTGGCATAGGCCGAATTCTAACATCGAGGAGTTCAACAATCTCTCTGAGGAACTTCGCAAGACAATGGAGGAATACATCGATCAGCTAATAAAACTAGCCGAAAATTTATCCGAACTCATGAGTGAGAATCTTGGCCTAGACAAAAACTACATCAAACAAGCATTCGCAGGGAAGAACAAGGTACCTTCAGTTGGAACAAAAGTGGCGAAATACCCAAAATGCCCACGGCCTGAGCTAGTCAAAGGCCTACGCGAGCACACTGACGCTGGTGGGATCATCCTCTTGCTCCAAGACGACCAAGTCCCAGGCCTAGAGTTCTTCAAAGATGGTGAATGGATCGAGATTCCACCTTCAAAGAACAATAGGATTTTCGTTAATACGGGTGATCAAGTTGAAGTGATAACTAATGGGAATTATAAGAGTTGTTTGCACCGTGTGATGGTGGATAAGAATGGGAGTAGACTTTCAATCGCAACTTTCTATAATCCTAATGGCGAGTCGGTCATTTCACCGGCTGAGAAGCTTCTTTATCCCAATGGATTTCTTTTTAAGGACTATTTGAAGCTCTATTCGGCAACTAAGTTTGCTGATAAAGGTCCAAGATTCGAGTACATGAAGAAAATGGATAAGGAGAACTAA

Network for GWHGAAZE015303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	3	66	4.20E-16
PF03171.21	2OG-FeII_Oxy	159	253	1.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05933	E1.14.17.4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.026
	SRR3591706	second leaf	1.715
	SRR3591707	mature leaf	4.066
	SRR3591708	Shoot apex	2.709
	SRR3591709	Stem	20.902
	SRR3591710	White floral bud	16.563
	SRR3591711	White flower	10.381
	SRR3591712	Green floral bud	16.492
	SRR3591713	Yellow flower	0.298
SRP173429	SRR8316895	Juvenile bud stage	3.272
	SRR8316896	Juvenile bud stage	3.619
	SRR8316897	Juvenile bud stage	2.239
	SRR8316894	Third green stage	1.725
	SRR8316900	Third green stage	4.701
	SRR8316901	Third green stage	3.888
	SRR8316898	Complete white stage	1.001
	SRR8316899	Complete white stage	24.046
	SRR8316903	Complete white stage	4.044
	SRR8316902	Silver flowering stage	0.844
	SRR8316904	Silver flowering stage	1.814
	SRR8316905	Silver flowering stage	0.532
	SRR8316906	Gold flowering stage	1.971
	SRR8316907	Gold flowering stage	1.901
	SRR8316908	Gold flowering stage	5.899
SRP132670	SRR6706286	Control	5.266
	SRR6706287	Light intensity 50%	3.297
	SRR6706288	Light intensity 20%	4.439
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.906
	CNS0095593	Slightly white alabastrum(diploid) 2	4.923
	CNS0095594	Slightly white alabastrum(diploid) 3	2.754
	CNS0095595	Whole white alabastrum(diploid) 2	5.168
	CNS0095596	Whole white alabastrum(diploid) 3	1.704
	CNS0095597	Whole white alabastrum(diploid) 4	3.263
	CNS0095598	Silvery flower (diploied) 1	6.042
	CNS0095599	Silvery flower (diploied) 2	1.217
	CNS0095600	Silvery flower (diploied) 3	4.113
	CNS0095601	Golden flower (diploid) 1	4.781
	CNS0095602	Golden flower (diploid) 2	5.192
	CNS0095603	Golden flower (diploid) 3	5.286
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.423
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.918
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.168
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.131
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.985
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.972
	CNS0095610	Silvery flower (tetraploid) 1	8.236
	CNS0095611	Silvery flower (tetraploid) 2	2.281
	CNS0095612	Silvery flower (tetraploid) 3	3.763
	CNS0095613	Golden flower (tetraploid) 1	0.987
	CNS0095614	Golden flower (tetraploid) 2	24.510
	CNS0095615	Golden flower (tetraploid) 3	1.388
CRA001975	CRR073297	Stem 1	1.393
	CRR073298	Stem 2	2.579
	CRR073299	Stem 3	2.245
	CRR073300	Leaf 1	2.927
	CRR073301	Leaf 2	3.621
	CRR073302	Leaf 3	4.755
	CRR073303	Juvenile bud 1	4.467
	CRR073304	Juvenile bud 2	2.443
	CRR073305	Juvenile bud 3	4.237
	CRR073306	Third green 1	0.290
	CRR073307	Third green 2	0.244
	CRR073308	Third green 3	2.466
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.689
	CRR073311	Second white 3	0.186
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.783
	CRR073316	Gold flowering 2	0.242
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.700
	CRR073319	Tawny withering 2	3.091
	CRR073320	Tawny withering 3	10.267