Gene detail

Detail information of GWHGAAZE015298

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010686376.1	4.889E-170	PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Beta vulgaris subsp. vulgaris]
trEMBL	tr\|A0A068UWX5\|A0A068UWX5_COFCA	7E-169	Coffea canephora DH200=94 genomic scaffold, scaffold_71 {ECO:0000313\|EMBL:CDP12787.1}
TAIR10	AT3G18790.1	1E-102	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	30823210	30825018	+
GWHAAZE00000004	mRNA	30823210	30825018	+
GWHAAZE00000004	exon	30823210	30823592	+
GWHAAZE00000004	exon	30824496	30825018	+
GWHAAZE00000004	CDS	30823210	30823592	+
GWHAAZE00000004	CDS	30824496	30825018	+

Transcript Sequence
>GWHTAAZE015314 ATGGCGCGAAACGAAGAGAAAGCCCAATCGATGCTCAACAGATTCATCACAATGAAAAACGAGGAGAAGAAGAAGCCAAAAGAACGCCGGCCATTCCTCGCCTCCGAGTGCCGGGACCTATCCGAGGCCGACAAGTGGCGGCAGCAGATCATGCGAGAGATCGGCAGGAAAGTCGCCGAGATCCAAAACGAAGGGCTGGGAGAACACCGCCTTAGAGACCTCAACGACGAGATCAATAAGCTGATTCGAGAGAAGAGTCATTGGGAACGGAGGATTGTGGAATTAGGTGGACCGAATTATGCGAAGGGTTCGGCTAAGATGACGGATTTGGAAGGCAATATTGTTGATGTTCCTAACCCTAGCGGCCGAGGTCCGGGGTACAGGTACTTTGGGGCGGCGAAGAAGTTGCCGGGAGTGAAGGAGCTGTTTGAGAAACCGCCAGAGCTTAGGAAGAGGAGGACTAGATATGATATTTATAAGAGGATCGATGCGAGTTATTACGGGTATAGAGATGACGAGGATGGGATATTGGAGAAATTGGAGGGGCCGGCGGAGGAGAGGATGAGGGCGGCAGCAGTGGCGGAGTGGATGGAGATGGAGGAGATAAAGAGGGAGGCGAGGAGGGCGGTGAAGAGCGGAGAGGTGGCGGAGGTGGGGATGGGGATGGCAGCGAAGATATTGTACGAGGAGGAGGAGGATGTGGTGGAGGAGGAGAGGATAGAGAAGGAGAAGGAGGAGAGAGAGAAGGATAAGGAGTTTGTGGTGCATGTTCCTCTGCCGGATGAGAAGGAGATTGAGAGGATGGTGGTGGAGAAGAAGAAATTGGAGCTTTTGAGCAAGTATGCTAGTGAGGATTTGGTGGAGGAGCAGATTGAAGCAAAAGCCATGCTCAATATTCAACAATAG

Network for GWHGAAZE015298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06246.13	Isy1	1	280	9.70E-90

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12870	ISY1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000350	biological_process	generation of catalytic spliceosome for second transesterification step

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.977
	SRR3591706	second leaf	14.062
	SRR3591707	mature leaf	11.799
	SRR3591708	Shoot apex	22.577
	SRR3591709	Stem	19.425
	SRR3591710	White floral bud	33.841
	SRR3591711	White flower	34.629
	SRR3591712	Green floral bud	28.432
	SRR3591713	Yellow flower	25.713
SRP173429	SRR8316895	Juvenile bud stage	13.680
	SRR8316896	Juvenile bud stage	23.696
	SRR8316897	Juvenile bud stage	8.737
	SRR8316894	Third green stage	8.893
	SRR8316900	Third green stage	20.686
	SRR8316901	Third green stage	22.644
	SRR8316898	Complete white stage	6.905
	SRR8316899	Complete white stage	21.314
	SRR8316903	Complete white stage	15.372
	SRR8316902	Silver flowering stage	13.893
	SRR8316904	Silver flowering stage	17.856
	SRR8316905	Silver flowering stage	8.736
	SRR8316906	Gold flowering stage	26.865
	SRR8316907	Gold flowering stage	30.205
	SRR8316908	Gold flowering stage	25.993
SRP132670	SRR6706286	Control	30.369
	SRR6706287	Light intensity 50%	27.844
	SRR6706288	Light intensity 20%	29.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.761
	CNS0095593	Slightly white alabastrum(diploid) 2	21.631
	CNS0095594	Slightly white alabastrum(diploid) 3	18.278
	CNS0095595	Whole white alabastrum(diploid) 2	16.693
	CNS0095596	Whole white alabastrum(diploid) 3	15.009
	CNS0095597	Whole white alabastrum(diploid) 4	15.406
	CNS0095598	Silvery flower (diploied) 1	27.805
	CNS0095599	Silvery flower (diploied) 2	20.050
	CNS0095600	Silvery flower (diploied) 3	23.505
	CNS0095601	Golden flower (diploid) 1	23.724
	CNS0095602	Golden flower (diploid) 2	23.476
	CNS0095603	Golden flower (diploid) 3	20.230
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.596
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.046
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.607
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.271
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.765
	CNS0095610	Silvery flower (tetraploid) 1	34.964
	CNS0095611	Silvery flower (tetraploid) 2	24.119
	CNS0095612	Silvery flower (tetraploid) 3	17.035
	CNS0095613	Golden flower (tetraploid) 1	22.883
	CNS0095614	Golden flower (tetraploid) 2	31.359
	CNS0095615	Golden flower (tetraploid) 3	19.002
CRA001975	CRR073297	Stem 1	23.006
	CRR073298	Stem 2	20.732
	CRR073299	Stem 3	19.430
	CRR073300	Leaf 1	22.782
	CRR073301	Leaf 2	22.700
	CRR073302	Leaf 3	14.873
	CRR073303	Juvenile bud 1	26.400
	CRR073304	Juvenile bud 2	16.205
	CRR073305	Juvenile bud 3	23.001
	CRR073306	Third green 1	13.694
	CRR073307	Third green 2	9.189
	CRR073308	Third green 3	12.787
	CRR073309	Second white 1	9.620
	CRR073310	Second white 2	12.071
	CRR073311	Second white 3	8.628
	CRR073312	Silver flowering 1	10.773
	CRR073313	Silver flowering 2	9.598
	CRR073314	Silver flowering 3	10.465
	CRR073315	Gold flowering 1	12.032
	CRR073316	Gold flowering 2	9.763
	CRR073317	Gold flowering 3	7.473
	CRR073318	Tawny withering 1	20.316
	CRR073319	Tawny withering 2	22.794
	CRR073320	Tawny withering 3	16.243