Gene detail

Detail information of GWHGAAZE015292

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002514113.1	0	WD-repeat protein, putative [Ricinus communis]
Swissprot	tr\|O22607\|MSI4_ARATH	0	WD-40 repeat-containing protein MSI4
trEMBL	tr\|B9RK69\|B9RK69_RICCO	0	WD-repeat protein, putative {ECO:0000313\|EMBL:EEF48067.1}
TAIR10	AT2G19520.1	3E-157	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	30366461	30384261	+
GWHAAZE00000004	mRNA	30366461	30384261	+
GWHAAZE00000004	exon	30366461	30366496	+
GWHAAZE00000004	exon	30368227	30368313	+
GWHAAZE00000004	exon	30368437	30368499	+
GWHAAZE00000004	exon	30369672	30369746	+
GWHAAZE00000004	exon	30371619	30371663	+
GWHAAZE00000004	exon	30372113	30372188	+
GWHAAZE00000004	exon	30372957	30373152	+
GWHAAZE00000004	exon	30377735	30377816	+
GWHAAZE00000004	exon	30380622	30380695	+
GWHAAZE00000004	exon	30381523	30381637	+
GWHAAZE00000004	exon	30381764	30381838	+
GWHAAZE00000004	exon	30382208	30382297	+
GWHAAZE00000004	exon	30382860	30382936	+
GWHAAZE00000004	exon	30383567	30383666	+
GWHAAZE00000004	exon	30384154	30384261	+
GWHAAZE00000004	CDS	30366461	30366496	+
GWHAAZE00000004	CDS	30368227	30368313	+
GWHAAZE00000004	CDS	30368437	30368499	+
GWHAAZE00000004	CDS	30369672	30369746	+
GWHAAZE00000004	CDS	30371619	30371663	+
GWHAAZE00000004	CDS	30372113	30372188	+
GWHAAZE00000004	CDS	30372957	30373152	+
GWHAAZE00000004	CDS	30377735	30377816	+
GWHAAZE00000004	CDS	30380622	30380695	+
GWHAAZE00000004	CDS	30381523	30381637	+
GWHAAZE00000004	CDS	30381764	30381838	+
GWHAAZE00000004	CDS	30382208	30382297	+
GWHAAZE00000004	CDS	30382860	30382936	+
GWHAAZE00000004	CDS	30383567	30383666	+
GWHAAZE00000004	CDS	30384154	30384261	+

Transcript Sequence
>GWHTAAZE015308 ATGAGAGTGCTGTTTGAATCTATGGGGGTTTATGCGACTGATGGTAGAGATCCAAATACCCTAGTAATAGCAAATTGTGAGGTGGTTAAACCAAAGGTTGCAGCTGGAGATCATATAGCACATTTCAATGAGGAGGCACGCTCACCATTTGTGAAGAAGTACAAAACTATCATACATCCTGGAGAGGTTCTCATTTGGGATATTGAAGCACAACCTAACCGTCAGGCTGTTCTTGGAGCTTCTGAATCTCGTCCAGATTTGGATAATACTCGGGATTATGTTGGTAGAATGGGATTGCTAGCCTATGTACTTACGGGACATGAAGACAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCATTTGTCCTCTCTGGAGGCAAAGACAGATCTGTAGTTTTGTGGAGTATCCAGGATCATATATCGACATTGACCATGGATGATGCAACCAAGTCTACTGGTTCTGTTGGATCAATCATTAAACCTGCTGATAACCCTAACCCTTCTATTGGACCTCGTGGGATCTTCCATGGGCATGATGATACGGTTGAAGATGTGCAGTTTTCTCCATCAAGTCCACAGGAATTTTGTAGTGTTGGTGATGATTCTTGCCTGATATTATGGGATGCACGGGTTGGCTCTGACCCTTTTGTCAAGGTTAAAAAAGCGCATAACGGAGATGTTCACTGCGTTGATTGGAATCCACTGGATGAAAACCTTATCCTAACTGGGTCTGCTGATCATTCTGTTAACATGTTTGATCGCCGAAATTTGACCTCTTCTGGTGGAGTTGGGTCACCTGTTCATAAATTTGAAGATCACAAAGCTGCTGTTCTCTGTGTTCAGTGGTGCCCGGACAAGTCATCTGTCTTTGGAAGTTCCGCGGAGGATGGTATCGTGAACATCTGGGATTACGAGAAGGATCTGCTTTTCTCTGCAGTTTCCTTTGAATTTTCCTTGGTGGAAAAGTTTGTGTCTTTTTTAGATTCCTCACCTCATGCTTATTGGATGGTTTCGAAAAAGAAAGAACGTGAAACAAGGTCTCAAGCATCTCCTTCAGGCTTGATTTTTAAGCACGCTGGACACAGGCATAAAGTTGTTGACTTTCACTGGAATGTATATGATCCATGGACAATCGTCAGTGTATCGGATGATGTTGAAGCATCTAGTGGAGGTGGTACTCTTCAGATATGGAGAATGACCGACTTAATATACAGGCCGGACTCGGAGATTCTGGCTGAGCTGGAACAATTCAAATCGCATGTTGTAGAATGTAGCTCAAAGTCGAAAGAGTAG

Network for GWHGAAZE015292

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	103	137	0.012
PF00400.33	WD40	175	210	0.007
PF00400.33	WD40	222	255	0.0065
PF00400.33	WD40	266	305	3.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K10752	RBBP4, HAT2, CAF1, MIS16	Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.721
	SRR3591706	second leaf	36.745
	SRR3591707	mature leaf	30.356
	SRR3591708	Shoot apex	74.840
	SRR3591709	Stem	46.712
	SRR3591710	White floral bud	47.970
	SRR3591711	White flower	64.341
	SRR3591712	Green floral bud	39.301
	SRR3591713	Yellow flower	60.232
SRP173429	SRR8316895	Juvenile bud stage	30.462
	SRR8316896	Juvenile bud stage	42.454
	SRR8316897	Juvenile bud stage	21.108
	SRR8316894	Third green stage	16.308
	SRR8316900	Third green stage	34.414
	SRR8316901	Third green stage	33.354
	SRR8316898	Complete white stage	15.658
	SRR8316899	Complete white stage	53.696
	SRR8316903	Complete white stage	28.706
	SRR8316902	Silver flowering stage	24.485
	SRR8316904	Silver flowering stage	34.903
	SRR8316905	Silver flowering stage	14.925
	SRR8316906	Gold flowering stage	56.813
	SRR8316907	Gold flowering stage	49.923
	SRR8316908	Gold flowering stage	54.107
SRP132670	SRR6706286	Control	18.103
	SRR6706287	Light intensity 50%	18.969
	SRR6706288	Light intensity 20%	22.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.357
	CNS0095593	Slightly white alabastrum(diploid) 2	26.877
	CNS0095594	Slightly white alabastrum(diploid) 3	32.624
	CNS0095595	Whole white alabastrum(diploid) 2	22.330
	CNS0095596	Whole white alabastrum(diploid) 3	16.022
	CNS0095597	Whole white alabastrum(diploid) 4	20.083
	CNS0095598	Silvery flower (diploied) 1	48.278
	CNS0095599	Silvery flower (diploied) 2	37.425
	CNS0095600	Silvery flower (diploied) 3	41.705
	CNS0095601	Golden flower (diploid) 1	40.594
	CNS0095602	Golden flower (diploid) 2	43.526
	CNS0095603	Golden flower (diploid) 3	41.977
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.896
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.403
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.414
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.433
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.361
	CNS0095610	Silvery flower (tetraploid) 1	41.661
	CNS0095611	Silvery flower (tetraploid) 2	41.438
	CNS0095612	Silvery flower (tetraploid) 3	34.513
	CNS0095613	Golden flower (tetraploid) 1	35.855
	CNS0095614	Golden flower (tetraploid) 2	41.501
	CNS0095615	Golden flower (tetraploid) 3	48.095
CRA001975	CRR073297	Stem 1	61.814
	CRR073298	Stem 2	50.221
	CRR073299	Stem 3	61.558
	CRR073300	Leaf 1	41.868
	CRR073301	Leaf 2	39.637
	CRR073302	Leaf 3	38.072
	CRR073303	Juvenile bud 1	37.311
	CRR073304	Juvenile bud 2	26.471
	CRR073305	Juvenile bud 3	34.967
	CRR073306	Third green 1	16.796
	CRR073307	Third green 2	15.802
	CRR073308	Third green 3	21.094
	CRR073309	Second white 1	23.512
	CRR073310	Second white 2	39.058
	CRR073311	Second white 3	36.091
	CRR073312	Silver flowering 1	35.919
	CRR073313	Silver flowering 2	24.003
	CRR073314	Silver flowering 3	30.824
	CRR073315	Gold flowering 1	46.851
	CRR073316	Gold flowering 2	60.433
	CRR073317	Gold flowering 3	30.298
	CRR073318	Tawny withering 1	63.284
	CRR073319	Tawny withering 2	80.386
	CRR073320	Tawny withering 3	73.208